FastQCFastQC Report
Thu 13 Sep 2018
HGTFWBGX7_n01_GST-NAC12.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTFWBGX7_n01_GST-NAC12.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3066113
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGTACG4653.0459507E-48.27965569
TATGCCG4703.4204763E-48.19103943
TGGAGAG23500.07.89369868
AGTACGG5159.107927E-47.47543970
CGTATGC6853.684981E-46.64229641
GGGCTCA20100.06.61709071
GTTGCGG12301.146509E-86.54478269
GTAGTGG28950.06.52856564
CTCCGGA5900.0038226256.52591633
TCCGGAG6300.00756156356.111971429
GAGAGGA36750.05.6188370
TAGTGGA33800.05.59186465
GGAGAGG32200.05.543534869
CCGTCTT8250.00344206115.514938447
TCTACGA12907.5884145E-65.42641264
TGTAGTG37500.05.413388763
GGATTCT13603.3356773E-65.40429074
AGGGATT13059.291827E-65.3639522
GGGATTC12402.266314E-55.36287073
GGCCGAG8600.0056153345.29049355
Produced by FastQC (version 0.11.5)