FastQCFastQC Report
Thu 13 Sep 2018
HGTFWBGX7_n01_GBF1_BECRAFT12.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTFWBGX7_n01_GBF1_BECRAFT12.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1631556
Sequences flagged as poor quality0
Sequence length76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAA1950.002299362312.56528626
TCAATAC3400.00140103979.26415861
CAAGATA4650.00277582537.52689868
AGTGAAG6208.643913E-46.7737939
ACACGTT5850.00349819476.581009444
AGGACGC7358.649427E-46.190495
GCGTAAG6300.00756724976.11112452
TCCCCAA8700.00105157425.63202444
GGCAATG10657.228813E-55.5870381
CGAGGAC14601.20867135E-55.03425743
Produced by FastQC (version 0.11.5)