FastQCFastQC Report
Thu 13 Sep 2018
HGTFWBGX7_n01_EREB2_BECRAFT11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTFWBGX7_n01_EREB2_BECRAFT11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1487600
Sequences flagged as poor quality0
Sequence length76
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATCTAT1300.002291208416.15386237
TCGTATG2153.2377345E-413.02283145
CGAGATT2356.846479E-411.91530533
CTCGTAT2150.004778763711.39497844
ATTCCAT3501.6436992E-410.0000137
GAGATTC2900.00394890369.65550634
GTCTGAA3300.00106620159.54514217
TCACGAG4000.00609020847.87553730
TCTTCTG6301.3185972E-47.22222955
Produced by FastQC (version 0.11.5)