FastQCFastQC Report
Thu 13 Sep 2018
HGTFWBGX7_n01_BZR3_BECRAFT5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTFWBGX7_n01_BZR3_BECRAFT5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2694597
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT8200.023.47529844
CGTATGC8250.023.33302346
ATGCCGT8850.022.14618749
CGCATCT9100.020.38472439
TCGTATG10050.020.19873845
TATGCCG9550.020.15642548
ATGCGCA10950.018.21995236
TGCGCAT11000.018.13713337
AATGCGC10950.017.90063535
TAATGCG11300.017.65561734
TCTCGTA11250.017.42166943
GTATGCC11850.017.13057347
GCGCATC12600.015.27842738
GCCGTCT13550.015.239367551
CTAATGC12700.015.15840433
CCGTCTT14450.014.5324152
TGCCGTC14450.013.8057950
GCTTGAA14550.013.71064961
ATCTCGT15400.013.40866442
ACTAATG15900.012.32756732
Produced by FastQC (version 0.11.5)