FastQCFastQC Report
Thu 13 Sep 2018
HGTFWBGX7_n01_BHLH91_BECRAFT2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTFWBGX7_n01_BHLH91_BECRAFT2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1898150
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTACGC2350.00925583110.42557964
ATGCCGT4159.0465735E-48.43355149
TATGCCG4000.0060966927.87482848
TCGTATG4000.0060966927.87482845
CCAGTCA7000.0033880226.00065926
CTCCAGT8550.0052297715.322362424
AGGGCGA9450.00297802225.18548221
Produced by FastQC (version 0.11.5)