FastQCFastQC Report
Wed 8 Aug 2018
HGNJYBGX7_n02.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGNJYBGX7_n02.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441706069
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCCGAC12050845927.282500164153277No Hit
GCAGTAGA10354596223.44227740280381No Hit
AGTAGTCT9260941620.966299197487366No Hit
CAGTACTG9080213220.55713932243933No Hit
GGGGGGGG219183734.962207797964397No Hit
TTCCCGCC5939720.13447222976689505No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)