FastQCFastQC Report
Sat 1 Jul 2023
HGNH2AFX5_n01_as6-6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGNH2AFX5_n01_as6-6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8759154
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATG183600.2096092841842945TruSeq Adapter, Index 6 (100% over 49bp)
GAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTAT113190.1292248086972783TruSeq Adapter, Index 6 (100% over 48bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)