FastQCFastQC Report
Fri 10 Aug 2018
HGMTYBGX7_n02.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGMTYBGX7_n02.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences303143112
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC5414687017.861817688273913No Hit
AACCGTAA4028671113.289667290873494No Hit
GGTTTACT3520406911.613019595840264No Hit
CGCATGTG3335654611.00356388767296No Hit
GAAGGAAC3253340010.7320267926787No Hit
CTAAACGG3141645310.363571447402704No Hit
TTTCATGA239174507.88982135935848No Hit
ACGTCCCT228711807.544680744717036No Hit
GGGGGGGG223243247.364285420412258No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)