FastQCFastQC Report
Wed 30 Jun 2021
HGMJJDRXY_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGMJJDRXY_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1917143993
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTTGAATATTTGCTACTACCACCAAG37089110.19346022070028207No Hit
ACATTATTCTATCAACTAGAGGCTGTTC36662580.19123540085598567No Hit
ATATTGTGTGGAGCAAAGAAATCACCGC21357210.11140117840903356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)