FastQCFastQC Report
Fri 21 Dec 2018
HGKKNBGX9_n01_Lex-9.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGKKNBGX9_n01_Lex-9.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23788759
Sequences flagged as poor quality0
Sequence length76
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATAGG288300.064.8524866
GGATAGT304100.063.1978656
CGGATAG123400.062.824055
GGGATAG306100.062.659175
GATAGGT256550.062.1264467
TGGATAG266050.061.817235
CGTATAG96450.060.673835
GGGGATA304300.060.4994134
GTATAGG233700.060.4898536
CTATAGG113750.060.0306786
CGGGATA158900.059.7796444
GCGATAG122750.059.7636535
GGTATAG226600.059.6821675
CTGATAG123200.059.602185
GGGTATA251450.059.268154
GGATATG367800.058.885176
CGATAGT131050.058.7828146
TGATAGG236750.058.468766
AGGATAG158100.058.2004175
CAGATAG110700.058.048695
Produced by FastQC (version 0.11.5)