FastQCFastQC Report
Fri 21 Dec 2018
HGKKNBGX9_n01_Lex-8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGKKNBGX9_n01_Lex-8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18955266
Sequences flagged as poor quality0
Sequence length76
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATAGG225450.062.9823726
GGGGATA246700.062.5795144
GGATAGT256500.062.4536486
CGGATAG99550.062.3701175
GGGATAG246250.062.196415
GATAGGT212200.061.4220057
CGTATAG73900.060.4324875
GGTATAG168650.060.3700645
GTATAGG171550.059.839176
TGGATAG224600.059.2626155
CGGGATA137350.058.9401444
CTGATAG96800.058.9354365
CTATAGG77650.058.68596
GGGTATA192850.058.620184
GGATATG309850.058.025966
ATAGGGG130300.058.018688
CGCTACC13650.057.948216
CAGATAG86400.057.725195
CGGTATA102450.057.598324
GCGGATA115200.057.421374
Produced by FastQC (version 0.11.5)