FastQCFastQC Report
Fri 21 Dec 2018
HGKKNBGX9_n01_Lex-3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGKKNBGX9_n01_Lex-3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6698262
Sequences flagged as poor quality0
Sequence length76
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATAGG83950.063.580226
GGATAGT84800.062.4889036
GGGATAG91250.062.1376725
GATAGGT73000.061.6568347
CGGATAG33400.061.5126575
GGGGATA86350.060.8808144
TGGATAG79500.060.7553865
CGTATAG26600.060.263835
GGGTATA83850.059.60714
GCGATAA36150.059.447415
GGTATAA73150.059.282955
GGTATAG72550.059.0013475
CTATAGG31200.058.4461636
CGGGATA51400.058.424774
TGATAGG59750.057.8165476
CAGATAG31150.057.1916475
GGATAAG61200.057.1329886
GGCGATA44300.057.1225284
CTGATAG33400.057.006625
GTATAGG72700.056.9538656
Produced by FastQC (version 0.11.5)