FastQCFastQC Report
Fri 21 Dec 2018
HGKKNBGX9_n01_Lex-1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGKKNBGX9_n01_Lex-1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26090551
Sequences flagged as poor quality0
Sequence length76
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATAGG292100.063.457336
GGATAGT323050.062.5131576
GGGATAG312500.062.439615
GATAGGT274000.061.6193477
GGGGATA315400.061.5325934
CGGATAG125750.061.2600565
TGGATAG286950.060.8638845
CTGATAG134550.059.7766655
GGTATAG236300.059.394475
GGATATG414900.059.3115166
CTATAGG108700.058.955486
GATAGGG268450.058.9037787
GTATAGG247900.058.6624036
TGATAGG231250.058.6482936
CGATAGT140250.058.6449136
GGGTATA275350.058.635924
CGGGATA176500.058.379244
CAGATAG119550.057.9377445
CGCTACC16550.057.733786
GCGGATA160350.057.6235924
Produced by FastQC (version 0.11.5)