FastQCFastQC Report
Fri 21 Dec 2018
HGKKNBGX9_n01_Lex-12.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGKKNBGX9_n01_Lex-12.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11403678
Sequences flagged as poor quality0
Sequence length76
%GC35

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATAGG137850.064.2607356
GGATAGT157900.063.3712656
CGTATAG43750.062.8788875
GGGGATA145300.062.6038444
CGGATAG53850.062.329445
GGGATAG150150.062.09685
GATAGGT127900.061.8714647
GTATAGG105850.061.203456
TGGATAG142950.060.9887735
GGTATAG111500.060.8643955
CGCTACC7500.059.7322776
CGGTATA63050.059.7293174
CGGGATA79500.059.4769334
GGGTATA116950.059.3448224
CTGATAG57500.059.2859085
CTATAGG45450.059.0638586
GATAGGG125300.058.574387
GGTATAA104950.058.5268335
GGATATG195900.057.9749836
AGGATAG76100.057.903055
Produced by FastQC (version 0.11.5)