FastQCFastQC Report
Fri 21 Dec 2018
HGKKNBGX9_n01_Lex-11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGKKNBGX9_n01_Lex-11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14839342
Sequences flagged as poor quality0
Sequence length76
%GC33

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGATAG206950.064.334115
GGATAGG191600.063.8436746
GGGGATA206400.063.793334
GCGCTAC11300.062.8758355
CGGATAG66800.062.612015
GGATAGT235200.061.5027126
GATAGGT190800.061.1388557
CGGATAA87650.060.1765865
GCGATAG72800.059.3747525
GGATAGC36250.059.185956
GGTATAG134400.059.0622525
CCGATAG27650.058.987095
TGGATAG215900.058.9274945
GATAGGG182350.058.693787
CGCTACC6500.058.692066
GCGGATA87700.058.3463944
GGGTATA163700.058.0907754
CGGGATA105800.058.0574074
CTGATAG70700.057.8215335
ATAGGGG93300.057.7320988
Produced by FastQC (version 0.11.5)