FastQCFastQC Report
Tue 27 Sep 2022
HGJTGDRX2_n01_S9_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJTGDRX2_n01_S9_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86386166
Sequences flagged as poor quality0
Sequence length101
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGC8227810.9524453255628916TruSeq Adapter, Index 10 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCGCGTATGC4108930.47564676038522186TruSeq Adapter, Index 10 (98% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)