[2021-05-10 03:55:08,761] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-05-10 03:55:08,761] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-05-10 03:55:08,761] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-05-10 03:55:08,762] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-05-10 03:55:08,762] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-05-10 03:55:08,762] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HGJM2BGXJ/merged [2021-05-10 03:55:10,082] multiqc [WARNING] MultiQC Version v1.10.1 now available! [2021-05-10 03:55:10,082] multiqc [INFO ] This is MultiQC v1.9 [2021-05-10 03:55:10,082] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HGJM2BGXJ/merged [2021-05-10 03:55:10,082] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HGJM2BGXJ/merged [2021-05-10 03:55:10,083] multiqc [INFO ] Template : default [2021-05-10 03:55:10,083] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-05-10 03:55:10,083] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HGJM2BGXJ/merged [2021-05-10 03:55:10,083] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-05-10 03:55:10,083] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-6653363/tmp7sqxvzyn [2021-05-10 03:55:10,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_F17_HK1073_rep1_fastqc.html [2021-05-10 03:55:10,210] multiqc [DEBUG ] File ignored by longranger/invocation because it 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[2021-05-10 03:55:15,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_2870_d12_rep1_fastqc.html [2021-05-10 03:55:15,468] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_2870_d12_rep1_fastqc.html [2021-05-10 03:55:15,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1417_d12_rep1_fastqc.html [2021-05-10 03:55:15,523] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1417_d12_rep1_fastqc.html [2021-05-10 03:55:15,587] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_2251_d02_rep1_fastqc.html [2021-05-10 03:55:15,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2021-05-10 03:55:19,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1912_d04_rep1_fastqc.html [2021-05-10 03:55:19,593] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1912_d04_rep1_fastqc.html [2021-05-10 03:55:19,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1915_d02_rep1_fastqc.html [2021-05-10 03:55:19,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1915_d02_rep1_fastqc.html [2021-05-10 03:55:19,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1417_d02_rep1_fastqc.html [2021-05-10 03:55:19,727] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2021-05-10 03:55:22,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_2239_d06_rep1_fastqc.html [2021-05-10 03:55:22,380] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_2239_d06_rep1_fastqc.html [2021-05-10 03:55:22,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1976_d02_rep1_fastqc.html [2021-05-10 03:55:22,425] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1976_d02_rep1_fastqc.html [2021-05-10 03:55:22,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_2869_d06_rep1_fastqc.html [2021-05-10 03:55:22,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2021-05-10 03:55:23,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1913_d02_rep1_fastqc.html [2021-05-10 03:55:23,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1913_d02_rep1_fastqc.html [2021-05-10 03:55:23,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1912_d08_rep1_fastqc.html [2021-05-10 03:55:23,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1912_d08_rep1_fastqc.html [2021-05-10 03:55:23,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_2867_d02_rep1_fastqc.html [2021-05-10 03:55:23,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2021-05-10 03:55:26,735] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1803_d02_rep1_fastqc.html [2021-05-10 03:55:26,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1803_d02_rep1_fastqc.html [2021-05-10 03:55:26,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1793_d02_rep1_fastqc.html [2021-05-10 03:55:26,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1793_d02_rep1_fastqc.html [2021-05-10 03:55:26,892] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1413_d04_rep1_fastqc.html [2021-05-10 03:55:26,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2021-05-10 03:55:29,735] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1797_d02_rep1_fastqc.html [2021-05-10 03:55:29,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1797_d02_rep1_fastqc.html [2021-05-10 03:55:29,819] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_2870_d10_rep1_fastqc.html [2021-05-10 03:55:29,820] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_2870_d10_rep1_fastqc.html [2021-05-10 03:55:29,863] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1974_d06_rep1_fastqc.html [2021-05-10 03:55:29,865] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2021-05-10 03:55:31,126] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_2235_d02_rep1_fastqc.html [2021-05-10 03:55:31,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_2235_d02_rep1_fastqc.html [2021-05-10 03:55:31,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_2869_d10_rep1_fastqc.html [2021-05-10 03:55:31,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_2869_d10_rep1_fastqc.html [2021-05-10 03:55:31,255] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1984_d02_rep1_fastqc.html [2021-05-10 03:55:31,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2021-05-10 03:55:33,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq2_2243_d08_rep1_fastqc.html [2021-05-10 03:55:33,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq2_2243_d08_rep1_fastqc.html [2021-05-10 03:55:33,845] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1976_d10_rep1_fastqc.html [2021-05-10 03:55:33,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1976_d10_rep1_fastqc.html [2021-05-10 03:55:33,908] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1411_d06_rep1_fastqc.html [2021-05-10 03:55:33,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1973_d06_rep1_fastqc.html [2021-05-10 03:55:41,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1973_d06_rep1_fastqc.html [2021-05-10 03:55:41,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1415_d12_rep1_fastqc.html [2021-05-10 03:55:41,940] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1415_d12_rep1_fastqc.html [2021-05-10 03:55:42,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq2_2243_d10_rep1_fastqc.html [2021-05-10 03:55:42,010] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq2_2243_d10_rep1_fastqc.html [2021-05-10 03:55:42,054] multiqc [DEBUG ] 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[2021-05-10 03:55:42,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1984_d12_rep1_fastqc.html [2021-05-10 03:55:42,268] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1984_d12_rep1_fastqc.html [2021-05-10 03:55:42,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1800_d06_rep1_fastqc.html [2021-05-10 03:55:42,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1800_d06_rep1_fastqc.html [2021-05-10 03:55:42,386] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1411_d04_rep1_fastqc.html [2021-05-10 03:55:42,387] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1411_d04_rep1_fastqc.html [2021-05-10 03:55:42,429] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_2239_d08_rep1_fastqc.html [2021-05-10 03:55:42,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_2239_d08_rep1_fastqc.html [2021-05-10 03:55:42,473] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1981_d08_rep1_fastqc.html [2021-05-10 03:55:42,475] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1981_d08_rep1_fastqc.html [2021-05-10 03:55:42,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1415_14_rep1_fastqc.html [2021-05-10 03:55:42,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1415_14_rep1_fastqc.html [2021-05-10 03:55:42,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1986_d04_rep1_fastqc.html [2021-05-10 03:55:42,666] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1986_d04_rep1_fastqc.html [2021-05-10 03:55:42,708] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_2868_d08_rep1_fastqc.html [2021-05-10 03:55:42,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_2868_d08_rep1_fastqc.html [2021-05-10 03:55:42,766] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_2243_d10_rep1_fastqc.html [2021-05-10 03:55:42,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_2243_d10_rep1_fastqc.html [2021-05-10 03:55:42,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1408_d02_rep1_fastqc.html [2021-05-10 03:55:42,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1408_d02_rep1_fastqc.html [2021-05-10 03:55:42,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_Sp19_pDZ_rep1_fastqc.html [2021-05-10 03:55:42,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_Sp19_pDZ_rep1_fastqc.html [2021-05-10 03:55:42,925] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1974_d02_rep1_fastqc.html [2021-05-10 03:55:42,927] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1974_d02_rep1_fastqc.html [2021-05-10 03:55:42,986] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1801_d02_rep1_fastqc.html [2021-05-10 03:55:42,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1801_d02_rep1_fastqc.html [2021-05-10 03:55:43,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1980_d04_rep1_fastqc.html [2021-05-10 03:55:43,075] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n02_ReSeq_1980_d04_rep1_fastqc.html [2021-05-10 03:55:43,118] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1794_d04_rep1_fastqc.html [2021-05-10 03:55:43,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGJM2BGXJ_n01_ReSeq_1794_d04_rep1_fastqc.html [2021-05-10 03:55:43,678] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-05-10 03:55:43,681] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-05-10 03:55:43,691] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-05-10 03:55:43,809] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 265 samples (table) [2021-05-10 03:55:43,819] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-05-10 03:55:43,823] multiqc [DEBUG ] No samples found: conpair [2021-05-10 03:55:43,828] multiqc [DEBUG ] No samples found: peddy [2021-05-10 03:55:43,832] multiqc [DEBUG ] No samples found: somalier [2021-05-10 03:55:43,836] multiqc [DEBUG ] No samples found: methylQA [2021-05-10 03:55:43,843] multiqc [DEBUG ] No samples found: mosdepth [2021-05-10 03:55:43,846] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-05-10 03:55:43,850] multiqc [DEBUG ] No samples found: qualimap [2021-05-10 03:55:43,854] multiqc [DEBUG ] No samples found: preseq [2021-05-10 03:55:43,858] multiqc [DEBUG ] No samples found: quast [2021-05-10 03:55:43,862] multiqc [DEBUG ] No samples found: qorts [2021-05-10 03:55:43,866] multiqc [DEBUG ] No samples found: rna_seqc [2021-05-10 03:55:43,870] multiqc [DEBUG ] No samples found: rockhopper [2021-05-10 03:55:43,874] multiqc [DEBUG ] No samples found: rsem [2021-05-10 03:55:43,883] multiqc [DEBUG ] No samples found: rseqc [2021-05-10 03:55:43,886] multiqc [DEBUG ] No samples found: busco [2021-05-10 03:55:43,890] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-05-10 03:55:43,894] multiqc [DEBUG ] No samples found: disambiguate [2021-05-10 03:55:43,898] multiqc [DEBUG ] No samples found: supernova [2021-05-10 03:55:43,908] multiqc [DEBUG ] No samples found: deeptools [2021-05-10 03:55:43,912] multiqc [DEBUG ] No samples found: sargasso [2021-05-10 03:55:43,916] multiqc [DEBUG ] No samples found: verifybamid [2021-05-10 03:55:43,920] multiqc [DEBUG ] No samples found: mirtrace [2021-05-10 03:55:43,924] multiqc [DEBUG ] No samples found: happy [2021-05-10 03:55:43,928] multiqc [DEBUG ] No samples found: mirtop [2021-05-10 03:55:43,934] multiqc [DEBUG ] No samples found: homer [2021-05-10 03:55:43,938] multiqc [DEBUG ] No samples found: macs2 [2021-05-10 03:55:43,941] multiqc [DEBUG ] No samples found: theta2 [2021-05-10 03:55:43,945] multiqc [DEBUG ] No samples found: snpeff [2021-05-10 03:55:43,951] multiqc [DEBUG ] No samples found: gatk [2021-05-10 03:55:43,955] multiqc [DEBUG ] No samples found: htseq [2021-05-10 03:55:43,960] multiqc [DEBUG ] No samples found: bcftools [2021-05-10 03:55:43,964] multiqc [DEBUG ] No samples found: featureCounts [2021-05-10 03:55:43,969] multiqc [DEBUG ] No samples found: fgbio [2021-05-10 03:55:43,979] multiqc [DEBUG ] No samples found: dragen [2021-05-10 03:55:43,983] multiqc [DEBUG ] No samples found: dedup [2021-05-10 03:55:43,987] multiqc [DEBUG ] No samples found: damageprofiler [2021-05-10 03:55:44,014] multiqc [DEBUG ] No samples found: biobambam2 [2021-05-10 03:55:44,018] multiqc [DEBUG ] No samples found: mtnucratio [2021-05-10 03:55:44,021] multiqc [DEBUG ] No samples found: picard [2021-05-10 03:55:44,025] multiqc [DEBUG ] No samples found: prokka [2021-05-10 03:55:44,028] multiqc [DEBUG ] No samples found: samblaster [2021-05-10 03:55:44,035] multiqc [DEBUG ] No samples found: samtools [2021-05-10 03:55:44,039] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-05-10 03:55:44,044] multiqc [DEBUG ] No samples found: bamtools [2021-05-10 03:55:44,047] multiqc [DEBUG ] No samples found: jellyfish [2021-05-10 03:55:44,053] multiqc [DEBUG ] No samples found: vcftools [2021-05-10 03:55:44,057] multiqc [DEBUG ] No samples found: longranger [2021-05-10 03:55:44,061] multiqc [DEBUG ] No samples found: stacks [2021-05-10 03:55:44,065] multiqc [DEBUG ] No samples found: varscan2 [2021-05-10 03:55:44,076] multiqc [DEBUG ] No samples found: bbmap [2021-05-10 03:55:44,080] multiqc [DEBUG ] No samples found: bismark [2021-05-10 03:55:44,085] multiqc [DEBUG ] No samples found: biscuit [2021-05-10 03:55:44,089] multiqc [DEBUG ] No samples found: hicexplorer [2021-05-10 03:55:44,093] multiqc [DEBUG ] No samples found: hicup [2021-05-10 03:55:44,097] multiqc [DEBUG ] No samples found: hicpro [2021-05-10 03:55:44,101] multiqc [DEBUG ] No samples found: salmon [2021-05-10 03:55:44,104] multiqc [DEBUG ] No samples found: kallisto [2021-05-10 03:55:44,109] multiqc [DEBUG ] No samples found: slamdunk [2021-05-10 03:55:44,113] multiqc [DEBUG ] No samples found: star [2021-05-10 03:55:44,117] multiqc [DEBUG ] No samples found: hisat2 [2021-05-10 03:55:44,121] multiqc [DEBUG ] No samples found: tophat [2021-05-10 03:55:44,124] multiqc [DEBUG ] No samples found: bowtie2 [2021-05-10 03:55:44,128] multiqc [DEBUG ] No samples found: bowtie1 [2021-05-10 03:55:44,132] multiqc [DEBUG ] No samples found: snpsplit [2021-05-10 03:55:44,136] multiqc [DEBUG ] No samples found: kat [2021-05-10 03:55:44,140] multiqc [DEBUG ] No samples found: leehom [2021-05-10 03:55:44,144] multiqc [DEBUG ] No samples found: adapterRemoval [2021-05-10 03:55:44,147] multiqc [DEBUG ] No samples found: clipandmerge [2021-05-10 03:55:44,151] multiqc [DEBUG ] No samples found: cutadapt [2021-05-10 03:55:44,156] multiqc [DEBUG ] No samples found: flexbar [2021-05-10 03:55:44,159] multiqc [DEBUG ] No samples found: kaiju [2021-05-10 03:55:44,163] multiqc [DEBUG ] No samples found: kraken [2021-05-10 03:55:44,167] multiqc [DEBUG ] No samples found: malt [2021-05-10 03:55:44,172] multiqc [DEBUG ] No samples found: trimmomatic [2021-05-10 03:55:44,175] multiqc [DEBUG ] No samples found: sickle [2021-05-10 03:55:44,179] multiqc [DEBUG ] No samples found: skewer [2021-05-10 03:55:44,183] multiqc [DEBUG ] No samples found: sortmerna [2021-05-10 03:55:44,187] multiqc [DEBUG ] No samples found: biobloomtools [2021-05-10 03:55:44,191] multiqc [DEBUG ] No samples found: fastq_screen [2021-05-10 03:55:44,195] multiqc [DEBUG ] No samples found: afterqc [2021-05-10 03:55:44,200] multiqc [DEBUG ] No samples found: fastp [2021-05-10 03:56:35,221] multiqc.modules.fastqc.fastqc [INFO ] Found 530 reports [2021-05-10 03:57:17,051] multiqc [DEBUG ] No samples found: pycoqc [2021-05-10 03:57:17,055] multiqc [DEBUG ] No samples found: minionqc [2021-05-10 03:57:17,060] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-05-10 03:57:17,064] multiqc [DEBUG ] No samples found: clusterflow [2021-05-10 03:57:17,068] multiqc [DEBUG ] No samples found: bcl2fastq [2021-05-10 03:57:17,072] multiqc [DEBUG ] No samples found: interop [2021-05-10 03:57:17,077] multiqc [DEBUG ] No samples found: ivar [2021-05-10 03:57:17,081] multiqc [DEBUG ] No samples found: flash [2021-05-10 03:57:17,085] multiqc [DEBUG ] No samples found: seqyclean [2021-05-10 03:57:17,085] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2021-05-10 03:57:17,085] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-05-10 03:57:17,085] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-05-10 03:57:17,085] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-05-10 03:57:17,089] multiqc.plots.table [DEBUG ] Plotting beeswarm instead of table, 530 samples [2021-05-10 03:57:17,091] multiqc [INFO ] Compressing plot data [2021-05-10 03:57:17,391] multiqc [INFO ] Report : multiqc_report.html [2021-05-10 03:57:17,391] multiqc [INFO ] Data : multiqc_data [2021-05-10 03:57:17,391] multiqc [DEBUG ] Moving data file from '/state/partition1/job-6653363/tmp7sqxvzyn/multiqc_data' to '/scratch/gencore/logs/html/HGJM2BGXJ/merged/multiqc_data' [2021-05-10 03:57:17,537] multiqc [INFO ] MultiQC complete