FastQCFastQC Report
Mon 10 May 2021
HGJM2BGXJ_n02_ReSeq_Blank_Well1_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJM2BGXJ_n02_ReSeq_Blank_Well1_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTCTGAAATAAACAAATTATTTAAAAAGCCAAGAACCTGGGATCTGG11.4084507042253522No Hit
AATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAA11.4084507042253522No Hit
AAAATGTGTTGTTGAGCCTGGGAACTGATCCTGCTGTGCTACTAGGTTGG11.4084507042253522No Hit
GTACATAAAATGGTGTTACTAGTAAATATGAACTTCGGATTTGATCAAGG11.4084507042253522No Hit
CGCACGTGGGGCTTCGTGGCCACCACGATCGCCTGCCTCTCGAGCACGGA11.4084507042253522No Hit
ACCTAGGACTACCAGGAATATAGAAATATAGAATCGTGTATTATAGATAT11.4084507042253522No Hit
GCTTGTGATTTTCAACCAGTTGGACACGATGGACTCGCAGGCACGCGATG11.4084507042253522No Hit
CTATCTAATCACGCTGTGTGGATGATCTGGCCTCACAACATTACCAACCA11.4084507042253522No Hit
TATATCCTCAACATATTAAGTTCATACAAGCACGTTCGGTAAATATTTAT11.4084507042253522No Hit
CGTCTCGGACTCGCCTCCCGGGGCCGCCGTCGCGCTGTTCCAGCACGGCT11.4084507042253522No Hit
ACAATGAAGAATGCTGCCTCTTTCTACACCAAATTCTCTCCATTATACTT11.4084507042253522No Hit
GTAAGCAAGCTTGCCAAGCGAAGGAGGCAAGAGTGTGTGGCTGACTATTT11.4084507042253522No Hit
CTTCCCCAAATGCCTCCAGGTCTTTAACAACAGAAGATGCCTGGGCCGAG11.4084507042253522No Hit
AATCATGACCACTAAAGAAATACTGAAAGTTTCACCCAACGAGAACACCA11.4084507042253522No Hit
ACTCATATATCAGCGAACACCGACTCCTCACCCTAAAATCGTTTGACTTT11.4084507042253522No Hit
TATCGCAGGTAGTCATAGAGGCAGGCAGAGAGAGAGAGAGAGAGATAGAG11.4084507042253522No Hit
GAAAAGCATGTCCTAGCCATCAAAGGACATGACTGAGGGCTCCTGAGTGG11.4084507042253522No Hit
GCACAATAAACTCATGAAGTGGATTTTATTTAAGCGTGAATTTCTTTTTA11.4084507042253522No Hit
GTTAGTGAGTTGTTGAATAAATCTAACAGCAGCCAGTAGAGATTAGTGGC11.4084507042253522No Hit
GATAAATAATCTATACTAGCTCAGCCGCACTCAGCAGAAGCCAGGCGTCC11.4084507042253522No Hit
GTCTAGGGCAGTGCCCGGCGCACGGTACCGTCTTAAGGCAGTTTGAGACA11.4084507042253522No Hit
GGAATATTGTCCCCATTTCACAGGGGAGAAAACAGGCTTCAAGTGACTTG11.4084507042253522No Hit
CTTTTCAGCTTGCCCTGGGCCACAGCGGCCAAGGTGCGGAGAAGCCGCAG11.4084507042253522No Hit
CATTTAATTTGTTCCCAAAGAGTAATCACTGGATTGGAGTTAACTGGAAA11.4084507042253522No Hit
AGTCCAAAGAACAGAAGGCAGTACAAGAGGCATAAAGCGTCTACCTGTGC11.4084507042253522No Hit
ACACAGCCTGCTTAGTTTGACCTGCTTCTCAGCCAACATCTTTCCTCCTA11.4084507042253522No Hit
GAGATAAAAAGTATTTCATGGTCAATCCCACTAACTGAGTCAGGACAACT11.4084507042253522No Hit
GTTGATGAGCTGGAACAAATAACAAATGTTTTAGGAAATGAAATGTGTTA11.4084507042253522No Hit
GGCCAAAAGGACTGTCATCCCCACAGACTGTACTGATTCAAGAAACAAAC11.4084507042253522No Hit
GAATTAAATGGTAGACTAACTGACCTGTTGAGACTTTTTGTCTGTACATC11.4084507042253522No Hit
TGTATATACTGCAGCCTCCCCTACCACCCCACTGCCCAACACCATCAGGG11.4084507042253522No Hit
GGGCCAATCTGGTCACAACCCATCTGCCACCTTTCTCAAGACACTGGTTG11.4084507042253522No Hit
AGTGAAAATAGTATCTGAATTAGCTAACTATGAAGTACCAAAAAACCTAT11.4084507042253522No Hit
GTTATTATAAGCACTTCACAGTGTTTGTTTCTTGAATCAGTACAGTCTCT11.4084507042253522No Hit
TCTTGGAAGACCTAGGCTTTATTTTATTAAGGACATTGACTGATTTCCTA11.4084507042253522No Hit
CCCCTTGATATTGTAATTAAATTTTGCCAAATGTAAAGAAAATGTGTGTT11.4084507042253522No Hit
CCCTGATTCCGCCCTGTACCTGTACCCCTGCCAGCAACTGCGTGGCCCGC11.4084507042253522No Hit
AAGGAGGCACTAAACAAAAGTCCCAACAAGCAATAATACATCAATATATT11.4084507042253522No Hit
TCTCCTACCATCCGTCTTCTAGGAACAGGATGATTTTCTCACGCTGTAAG11.4084507042253522No Hit
GATGCAATCTTGTAATTCTCTGCTTGTATTAAAGTCGGATTTTAAACTAT11.4084507042253522No Hit
GAAAAGAAATGTGACCTCATCCTCCACATTAAGAAACTAGACAAATAAGA11.4084507042253522No Hit
GAGGCGAAAGCATTCATCTAACACTCCGTGAGGACGGTAATTATCTCCAA11.4084507042253522No Hit
GAATAGGAACGATTCAAGGAGAATAGAAATGTGTAGTTGCAAGGGACAGG11.4084507042253522No Hit
AATTAGGTCCCTTAAAATAGATAAAATATTTGCAAATTGGGTACTGCTGT11.4084507042253522No Hit
GTAGAATTGTTGCGTGCGGAGATTTTGTTTGAGGTAGATCAGGGGCCATT11.4084507042253522No Hit
GTATATATATATAGCACAGGCCTATGTCAAGAAGCAAGAAAAATCTCAAA11.4084507042253522No Hit
ACATACACACAATGGTATATTACTCAGCCATCAGAAAGGATGAGATCCTG11.4084507042253522No Hit
GCTCTACAGGCAATAGGTGGTAGGGAGGAATCCAGAACGAGGAAAGCTCT11.4084507042253522No Hit
GTTAAAAAGAGGCAGCGGCTTTTAACTTGCAATTTCATTATGATTAATAC11.4084507042253522No Hit
CTTCCTAGAAGTGGGATGTTAGGTCCCATGAGCCATAGGTTACTAAGCGG11.4084507042253522No Hit
TCCTGGCAGAAGGCACACATCAGCTGTGACTCAGGAGCTCTGGGACTTGC11.4084507042253522No Hit
ATACAGATGTCCCCAAACCTTGTTTTCAGAATTCGATCCTGCCATCCCTG11.4084507042253522No Hit
GTGTGTGTGTGTGTGTGTGATTGTAGTGATTTAGCAAATTATTCAGTCAC11.4084507042253522No Hit
GGAGCGAAAGGAGGAGATGTGGATGGATGGCTTGAGTTTGAAAGCAACAG11.4084507042253522No Hit
GTCTTAAGTACCCCAAACTACCCTTTTCAGTACAAATACTTTTGGTACAA11.4084507042253522No Hit
ATATGAGCTAGAGATACACTCTAGAAAAGGGGCGGTTAAAAACCCAGTTA11.4084507042253522No Hit
GTTCAGAGAGGAGAACAGTTGCTGAGAGGGTCGGGCACTGTGATTTATGA11.4084507042253522No Hit
GGTGTTGACTCACTAAATTGTACGCCTGAAACTAACATTATGCTGAATGT11.4084507042253522No Hit
AGTCCCACATTGGGCTTCCCATTTGATGGGGAGCCTGCTTCTCCCTCTAC11.4084507042253522No Hit
GAGTTACGGATTTTTTTTTTTTTGGACACATTTAAATACATGCAAAAAAA11.4084507042253522No Hit
AAAGATCCCCATTTGTCACACTAAGTAAAATACGTGAGTGGTCATTGATC11.4084507042253522No Hit
GTTTGCATATCCTGAACTGCCGGGTGTTGTCCCAATTTCAAATATTCTGT11.4084507042253522No Hit
TCCCTGCTCTTAGCTCCAAACTGCACCCTTCACCCAGATCACAGTCTAAG11.4084507042253522No Hit
AGCCGGCCTCGGGTCGCCCGGTCCTCATGGGCATCACGAAGGCCTCGCTC11.4084507042253522No Hit
GAATAGGCCTTATATGGAATAGAACATGGACATTTAGAGTCAAATACACC11.4084507042253522No Hit
CCTTTAAACATGCAGGAGGATTATTAAATTTCGGCTTCGGCATTACTAAT11.4084507042253522No Hit
AAATAATGGAGAGGATTTTATGCATCAGCGAGGCTTTTTCATTTCATGGG11.4084507042253522No Hit
GTTGAGATGTAGATGCCGAAAATCAGAGAGCTGGGTTAACTTGCCTCGTC11.4084507042253522No Hit
CTTAAGGTTCACCCCAACACACACAGAGTCCCGGGCAAAAACTCAGAGAT11.4084507042253522No Hit
CATATAAACGATTTGATTTAGATAAATTGCTGCCATATGACCAGCCCTCT11.4084507042253522No Hit
NTTCAATCGGTGTAGTCTCAATGAGGATAGAAGGCGTAGATCTGAAGTAA11.4084507042253522No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)