FastQCFastQC Report
Mon 10 May 2021
HGJM2BGXJ_n02_ReSeq_2868_d04_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJM2BGXJ_n02_ReSeq_2868_d04_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTGGGAGGAGCCAGTAGAGGGATGACCTCATGGTCCAGGTGACACAC11.7241379310344827No Hit
GTGTAAATGTTTAGTACCACCAAGGTCCGGTGTGTACTGTGTGTTGGTCA11.7241379310344827No Hit
CACTTTCTGCTTGGGAATGAGCATTAACCAATCCCTTGACATTTCCTCAA11.7241379310344827No Hit
GCACTCTTTTGAACCAAACGATAGAAGAAGGGACAAAACACGCATTGAGA11.7241379310344827No Hit
GTAGAAACAAGGCATTTTTTCATGAAGGAAAAGCAAAATTCACTTCCATT11.7241379310344827No Hit
GCCTGCGTTGCTCTGAGCCTTTTATGTAACAACAGTCAGTGTGCAAATCA11.7241379310344827No Hit
TGCTGGGACTACCTGGGTGGCACAGACAGTTAGGCAGCTCCCTCGTGATT11.7241379310344827No Hit
CTCTTTATAGTTAAGGTTTCGTGCACAGACTGTAGGATACACGATGTCAC11.7241379310344827No Hit
ATACATATCACACTTGAATTGCTGAAAATAATAATAAAGAAAATCCATGA11.7241379310344827No Hit
CGTTAGACTCACATAGAAGCTGCTGAAATGTGACAGAAAGTGCTATAGAA11.7241379310344827No Hit
GTCCAGACCCTCTGTTACTGATGAGGGCCAACTCTCACACCACAGGCTGT11.7241379310344827No Hit
TCATTAATCAGGCACTCCTCAATTGCTCCATATAGCCCTTCAAGATCAAA11.7241379310344827No Hit
GGTATGGCCACAGTTGACAGAGTATTGGGGTGAGTCACAGTTCTCAAAAC11.7241379310344827No Hit
GGTCTAATGGAAGAATTATTTTAGTGTATGTTTATGCATACACATCTTAA11.7241379310344827No Hit
GTTTTGGGGAGGCCTTACCATAAAGTAAAGAAGGATTTAGGTAGGGCTCA11.7241379310344827No Hit
CTTTTTCTGCATCTGTTGAGATGGTCCTATGATGTTGATCCTTCGTTGTG11.7241379310344827No Hit
CCCCCGGGAATGCTACTGCCCCCCGGATTTCCCGTCCGCCCTCTACTGTG11.7241379310344827No Hit
AAGTGGGAGTTGATGGATGAAGATTACCAGGGAAGACTGTGTACCCCTAT11.7241379310344827No Hit
CGGACTGCAAAGACCTGAGTGAGGTGATAGGAGTAGCGTTTGGGTGCGAG11.7241379310344827No Hit
AATCTAGGTCATGGTCAACTTCCCACTCCCTGTGCTGGTCACTGAGGCTC11.7241379310344827No Hit
GGTGCTTGGTGACGGGCGTGTGGCGTGTTGTGCTGGTGGGGGCCCGGGGT11.7241379310344827No Hit
GCCTTATTGACAGGGGTTTTTCTAATTTGATGCCTGGCAGTTCCCTACTC11.7241379310344827No Hit
CGCGTGTATACATGCACCCGCATACCATGCTCTGTTCTAGCTTGGGCACA11.7241379310344827No Hit
GCAGCTGATGTTGCCTGCGTGGGAATGCCAACTTCCTTTGCAAACAGAGA11.7241379310344827No Hit
GACTAGATATAGGAGGAATAATCTTAGAAAGTCAAAATATAATCACTGCA11.7241379310344827No Hit
CCACTGATATACAAAGGCTCTTAAGAATGTACTATGAACAATTACACCCC11.7241379310344827No Hit
GGATATTGTGGGCCAGGTTGAGCTGCATGAGGTTCTTGAGGCCCTGGAAG11.7241379310344827No Hit
GTCATTTATTGATTTGACACAGAGCGGGAGAGAGAGACAGACAGACTGAG11.7241379310344827No Hit
CTTACAGCGTGAGAAACTCATCCTGTTCCTAGAAGAGGGATGTTAGGAGA11.7241379310344827No Hit
CTGTTCAATAGATTACTCGCCTGGGCAAGCCACTTCCTCCCTCCAGGACC11.7241379310344827No Hit
GTAAAAGAATTCAAAAATTAAAAGTAAGACAAGTTATAATAGTACTAAGA11.7241379310344827No Hit
GCAAAAGCAGGGGGAACAGCAGGCAGAGGGAGAAGTAGGTTCCTCTCCAA11.7241379310344827No Hit
TCACATAACCAACTGGTGGCTTATGTGCCAATGTTAATATTATAATGAGA11.7241379310344827No Hit
CCCACCGAGCAGGTAGCCAGATGAGGTGCTTGATCCAGGACCCAGGGAAT11.7241379310344827No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG11.7241379310344827No Hit
GCCCCGGGAATAATGTCATATTAAGCATTGTAGGTGTGAGATGGGAGCCA11.7241379310344827No Hit
GGGGCTGGGGTGTTGGAGAATGGGGGCAGGCCTAGCCAGGGGTGGGAGCC11.7241379310344827No Hit
ATATCACCTCCATACAATGGAATACTCTGCTGTCATGAAAAATAAATATG11.7241379310344827No Hit
GGGGGGGTGGGGGCTGGGGGGGTGGGCTGCTGGCGGGGCGGGGGGGGGGG11.7241379310344827No Hit
TCCTACCACTAGGCCGAGAGGGGCTGCATCCAGGGACTCAGAGGCTGATA11.7241379310344827No Hit
CCTCAGCAGGCCTCAGTTGCAAGAGCAGGTTGTGTGGAGCCAGAGGGAGT11.7241379310344827No Hit
GAACAACTTTTTTTTTTTTTTAAAAGAAGACTCAAACGCCAGCATGTGTA11.7241379310344827No Hit
GCCTGCACTGGATCAGCCCAGTCAAAGCAACATGAGACACACAGTAAAAG11.7241379310344827No Hit
AACCAACCTGTCTTGGCAGCGTTTTCTATGGCCTTAGCGTGAGCGCATGG11.7241379310344827No Hit
CAGTCATCTGCCACACCTGGTCCCCAATAAAATTTCCATCCCTATCCCAT11.7241379310344827No Hit
CAAGGTAACTCCCTCTCAAAGCGACTGTAATTGACAAACTTAATAGTGCC11.7241379310344827No Hit
GAGATCACTTAGAATAGTACCTATGAGAGAAAGCCCTCAAAAAATGTTGT11.7241379310344827No Hit
GCACCAGGAGATGTGTTTTACACAGAAAAGTGCAAGCCATTTGACAAACG11.7241379310344827No Hit
GCAAAGGGGCCCCGTCCCATTCAGGTTGGGAATGAGCATTAACCAATCCC11.7241379310344827No Hit
CAAACAAGCCTGATGTGTTTATAGAGCTGTCTGAGCTCCAGGATGGCGCA11.7241379310344827No Hit
TCCTGGAGGATTTACAAATACGTCTATGAATGTATCCAGCGTATGGTAGC11.7241379310344827No Hit
ATGCATTTATTCAGTGCCTGGTGTCTGCAGGAGAGTTCCAGTTTCCCTCC11.7241379310344827No Hit
TTAGAGGGTAAGCTGAGGCCTCACAATGGGAGAAGAACAGAATATTCATT11.7241379310344827No Hit
GGCTTGATCCCAAGACCCTGGGCTCATGACCCAAGCCAAAGGCAGACACT11.7241379310344827No Hit
GGCGCCGTGTTAGCCGCCTGATTGAGTTATGACAGCTCCGCGCGCCCCAC11.7241379310344827No Hit
GTTTGTTCCGCCATCTGGTTTAATGAGGGTGATGAATATGGCCTGTAGCA11.7241379310344827No Hit
CCAATACCATAGGGAACTTTAATACCTCACACTTCCCTCAATGATCCCCC11.7241379310344827No Hit
AGTGCCAACTGTGGCATACCTGTGAGAGCATAAACCGAGAAAAAGCCACT11.7241379310344827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)