FastQCFastQC Report
Mon 10 May 2021
HGJM2BGXJ_n02_ReSeq_2235_d06_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJM2BGXJ_n02_ReSeq_2235_d06_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTAGGACCCTATGGCTCATTTCTCCTAACATCCCTCTTATAGGAACAG17.6923076923076925No Hit
GATCGAGCCCGCATGCGGGCGACGGGTGCACGGCCCAGCACGCACTAGCA17.6923076923076925No Hit
GAACCAAGAGGGTGGAGAATATACATACACGATGTTTTCTGACTTCGAAT17.6923076923076925No Hit
ACCCTGAGATCATGACCTGAGCTGAAGGCAGATGCTTAACCAACTGAGCC17.6923076923076925No Hit
CAGATGGGGGGGGCAGTGATTTGGTAGCAGCGCTATCAAATGCTTTTTCT17.6923076923076925No Hit
GTATTAATTATTGGTAAATTCCTATACCACAATTTCACAGCCAGAGCTGA17.6923076923076925No Hit
CCCACGCACACCATCCAAGTTCTTGAATTAGATCATTATGTTTTATATTG17.6923076923076925No Hit
CAAAAAGATCAATAAATGTAAATGACAAAAAAAAAAAAAGAATCCAGCCA17.6923076923076925No Hit
GCTTTCCTTGAGATTGTGACCAACCAGAATCTTGGAGAAACATTGCCTGA17.6923076923076925No Hit
ACGTTATTGTATGTCTGTGGGTGTAAGCAGCTGTGCCAATCCTTCTGGAA17.6923076923076925No Hit
TGTAAGTAGTGTCATATAGTACTTGTCGTTTGACAACTAGCTTATTTTAC17.6923076923076925No Hit
GTAAAATACTATCCTATATTATCTTACTGCAGGCTGCTTTCTCACTATTT17.6923076923076925No Hit
ACAGCCTGCCTGGCAGATTTTCTACAATAACAACAGCCTGTGTCTGTACC17.6923076923076925No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)