FastQCFastQC Report
Mon 10 May 2021
HGJM2BGXJ_n02_ReSeq_2233_d06_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJM2BGXJ_n02_ReSeq_2233_d06_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCCACCTTATGCATTTGTTTTTTTTTTGGGGGGTGGGAATGGAGCAGA11.8181818181818181No Hit
CCTAATTTCCCTTTCCTGTCTCAGAAGCAACAAAATGGGTGCTGTGGGGA11.8181818181818181No Hit
TTGCAGGTCCGTGAAGCTCGGCTTGGTCATCTTACATTTTCTGTAGTTAT11.8181818181818181No Hit
GATTGTTATACTCAAATTAATTTTCACCATTATTGACTTTACGACATGAT11.8181818181818181No Hit
TTACACTCCAACCCACTCAGGCAGGCCTTCGGGCCAAAGAATTTATAAAA11.8181818181818181No Hit
GACTTGGGGAAGCACTTGGCCTCCTGGCTCTGTAGGTCAGACCCTTGGCG11.8181818181818181No Hit
GTTATAACGGGCTGTAGGCTTGAAAAGATCAAGGAAGGCGCCTTAGTAAA11.8181818181818181No Hit
TGACTCTACTGTAAGAGTTTTATAGCATTATTCAAGCCTATAAAGTTAGC11.8181818181818181No Hit
GGATGCTATTATGCTGCCTAACCCCAAGGGCTTAGTCATGGGAGGTAGCC11.8181818181818181No Hit
GTGCATAAAGATCTGGGTCCTTCTGACCTGGCTATTCAGCGGCTTAACCC11.8181818181818181No Hit
CAGGGAGAGGGCCTGCCTGCACTGGCCCTTGCCCTCACCCGCACCAGAGC11.8181818181818181No Hit
TCTGGTAAGCCTGCAAATTTTCAATAAGATCATCTTTTAGACCTGCACTG11.8181818181818181No Hit
TGGGAACAGTGACCACAGAAGTGGCTCTTGGCCTAGTATGTGGCACTTGT11.8181818181818181No Hit
ACCATATTCCCTTATACTGGAGATCCCCCATATAGCCATGGAACAGGCCC11.8181818181818181No Hit
ATTATTTATGGAGCCACTAGAAGAACTTGTCAGGGTTCAGGAGTGTCTAA11.8181818181818181No Hit
CTCTTTAACCTGTTTCAGAGGAACAAATATGAGACTAAAACATTTAGGGA11.8181818181818181No Hit
GTCTCGTGATGTTATTCAACAGATCACTAAAGTTATATTTAATTTTTTTT11.8181818181818181No Hit
ACTACAAGGAGAGCTGGTCATTCCTGAGCACTCACTGGGCACCTGGCACT11.8181818181818181No Hit
ACTGAACACTCCCTGAACACTTTAATCTTGGAGGTTTCTTTTCCCTTAGG11.8181818181818181No Hit
GATCTGGGGAATAACATCAAGAGACCGATCATTTGGTATAACTGGAATCC11.8181818181818181No Hit
CTAAATAAGTGTATGTGGCATACCAAAAGTGCTTAAATATTATTGCTTCC11.8181818181818181No Hit
GAGCAAAAGAAGGTAAAGTAAGAATACAAAGCTCTTAAAAGGGACGAACC11.8181818181818181No Hit
AACTAGAAGCAAAACCAACAGACTTAGTTCTTACTGGACTTGGTATACGA11.8181818181818181No Hit
CAGCCCAACGGGGTAAGTTAGAAGACGTAGAAGTTCAGCGGGCCCGTGCT11.8181818181818181No Hit
CCTCAAGCCTCCAGGACCTGAGAGGAGTGCCAACCCCTGCCCTGCTCCAT11.8181818181818181No Hit
GTCCTCGTGCAGGGAGTCCTGGCTGGCCAGCCCCAGCACGTGCATGGTGC11.8181818181818181No Hit
GAAAAAGACATCTGAACAGACTAATGACCAGTAGAGAGATTAAATAAGAA11.8181818181818181No Hit
GAGAAAAAAGATCCCCATTTGTCACACTAAGTAGAATACGTGAGTGGTCA11.8181818181818181No Hit
GATAATATGTAAATTCAGAAGCCATGAACAAAGCACACCAATGCTATAAG11.8181818181818181No Hit
ACTTGAGGCGGTGGGGCTTTGCGAGCGGTGGGGGCGGGGTCGGCAAAGTT11.8181818181818181No Hit
CTTCAAGCAATAGTTGTAAGGCTTGCATAAAGGTTATTTGCTCAAAGCTA11.8181818181818181No Hit
GTGTGCAACCATCACTCCTATCTAATATATCCAAAATATTTCTATCGCTC11.8181818181818181No Hit
GACTATGACACTACATTTCAATGAATGTACCAACCCATCGAACAATCAAG11.8181818181818181No Hit
CTCCAAAGCTGAAGGATGAGCTGATTTTCAAACCCATTGCTGCCTTGCAT11.8181818181818181No Hit
GTCTATTGGTTTTGTTGCTTTTGGTGGGTTGGGTGTGTTTGGATTGTTGG11.8181818181818181No Hit
GCTCCCCCCAGCGCGGCAACGGTGTGGGTGAGGCGCCGGGGTCCTGCCAT11.8181818181818181No Hit
ACCCAGGTGCCCCAAATCTTGGGCTAGTTTTGAACCTAATTTCTTGTTAA11.8181818181818181No Hit
CTGCACCTCACTGCAAATCTGCTGCTTTGCCTCTGCTTTTACCTTGTCAA11.8181818181818181No Hit
CCGGGGAAGGAAGTGTATGTGCAGAAGCCGTTGCCGCTGTTACCTCGAGA11.8181818181818181No Hit
CGTGCACGAGGGGGAGGGCAGGGGGAAGGAGAGACCGTCTCAGGCCAACT11.8181818181818181No Hit
TTCTATTGTCTTTTTAGTTTGTATTTAATTTATTTAAGTTCTGATGTGTT11.8181818181818181No Hit
CTCATAGACTCAGGCACTCCTTCCGTAGAAGGCCCTCTTTTCAAACCGTA11.8181818181818181No Hit
CCTTCGGCTTTGCTCAGGCTGTCTGTCTGTCTCTCTCCCCAGCTCTGTGT11.8181818181818181No Hit
GACTTGACAGATACACACAGAACTCTCCATCCAAAAGCAGCAAAAGGAAT11.8181818181818181No Hit
TATCAGCAGAGTTCACAAATACATTGAAAGTGGCTTTTTCTCGGTTTATG11.8181818181818181No Hit
GGACGGGGGGGGGTGGGGGTCGGTGCGGGCGGGTGGGGGGTGGGGGGGTG11.8181818181818181No Hit
GGTGATCAGTACCATCTGGGGGATGGTAGGATGAGCAATTTGATCAGATA11.8181818181818181No Hit
ACATGTAGCTAACTGAAGAAAGAAACTCCTAAGGAGACAGAACAGCAGAT11.8181818181818181No Hit
GGTCTGTCTCAATACCCGGTTTATGCTTAACACCCAGGTCTGGGAGGATC11.8181818181818181No Hit
ATGTTCAGGTTCATTCTACAGGAGTATGAGATGGCTGACTCAAAAGAGCG11.8181818181818181No Hit
GGGGGAGGGACAGAGGGAGAAGATGACTCCCCACTGAGCAGGGAGCCTGA11.8181818181818181No Hit
GCTCATGGGAGAAGAATTTATTGTGTTTATTTACAGAGGAAAAAAAAAAA11.8181818181818181No Hit
GCGCTATCAAGTGCTTTTTCTGCATCTGTTGACAGGGTCCTATGATGTTG11.8181818181818181No Hit
AAGCACACCCCTGCTCTAAGTCTGGTTTTCTTTTTTTTTTCTCTGTAAAT11.8181818181818181No Hit
GTGTTGTACCGTTGAGTTCTCCTGCGTGATTCGTGGGGGGGTGTGAGTCG11.8181818181818181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)