FastQCFastQC Report
Mon 10 May 2021
HGJM2BGXJ_n02_ReSeq_1984_d10_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJM2BGXJ_n02_ReSeq_1984_d10_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2026870
Sequences flagged as poor quality0
Sequence length151
%GC49

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCACACCAGGCCATGGAGATCCCTCACGCCGTAAGCATTGGGAGCGC68750.33919294281330326No Hit
GAATACAACTCGGTCATGCCGCCGATGAACCAGCTCAACGACGACGAGGT44980.22191852462170736No Hit
CATCAGGATGGCGTAGTTGTCGCGTTGCTGCAGGTTGATGGCACCGGCGC44450.21930365538983754No Hit
CTCCATGCCGGATCGTCTCGGGCGTCGGGTCGGGTGTCGTCTGCCGCCGC39600.1953751350604627No Hit
GTACAGCGCGGCTGCCGACTACGCGGACCTGCCGGGTGGAACGATGCGCA39550.19512844928387119No Hit
CCGCTGTACAGCGCGGCTGCCGACTACGCGGACCTGCCGGGTGGAACGAT39190.19335231169241243No Hit
CCTATGTCCTCAACGCCTGGGACAACGCTGGCGGGCGCGTCACGACCGAC35460.17494955275868704No Hit
GGTCAAGGTCGATCGCTTCAGCATGCGAACCACGCCTGTCACCCGCGTCG32070.1582242571057838No Hit
GTGCCGGCCAGTCTGCGAGGTAGCTGGCGTCGGCGAACACGCGCGAGGCT30240.14919555768253515No Hit
TCCCCATACTGTGTCCAGCTCTCTTTGTATGTTCACAGAGGTGGAGAGAC29870.1473700829357581No Hit
GTCTGCCACCAGGCCAACGGCGCCGGCCTCCCCGGCGTGTTCCCGCCGCT29700.146531351295347No Hit
GTTCAATGCTGGCTTTGGCGTTGCTGCCGCTGTACAGCGCGGCTGCCGAC28720.14169631007415376No Hit
ATCCTCACCTATGTCCTCAACGCCTGGGACAACGCTGGCGGGCGCGTCAC27660.1364665716104141No Hit
GTGACGAACAACGCCTGCATGTTCAGTTCAATGCTGGCTTTGGCGTTGCT25110.12388559700424794No Hit
CACCTATGTCCTCAACGCCTGGGACAACGCTGGCGGGCGCGTCACGACCG24900.12284951674256366No Hit
GGCCTGGGCCGCGAACCAACTGACATGGGTGACCGGCTGCTGCGATTGAG24700.1218627736361977No Hit
GTGCTGCACGGCCTCTCAGGCAAGGTCAAGGTCAACGGCCAGGAATACAA24500.12087603052983172No Hit
GTTCAGTTCAATGCTGGCTTTGGCGTTGCTGCCGCTGTACAGCGCGGCTG24450.12062934475324022No Hit
GTCTGCGAGGTAGCTGGCGTCGGCGAACACGCGCGAGGCTCTGCCGCGCT24280.11979061311282915No Hit
CTCCCATTCGTTCCATGTCGGCAGGCGCGCGCTTTCAGACTCGCAGAAGG24240.11959326449155594No Hit
GTACAGCGGCAGCAACGCCAAAGCCAGCATTGAACTGAACATGCAGGCGT23760.11722508103627761No Hit
TGCATGTTCAGTTCAATGCTGGCTTTGGCGTTGCTGCCGCTGTACAGCGC22670.11184733110658304No Hit
AGCGAAAGCAGGGCGACGCGCATCAGGATGGCGTAGTTGTCGCGTTGCTG22570.11135395955340008No Hit
ACCTTGACCAAGCCGCCCGTGGCGTCGCCCGCGAGGACGCTGCGCATCGT22460.11081125084489879No Hit
CATCGGGGGCACGCGGTGACGAACAACGCCTGCATGTTCAGTTCAATGCT22050.10878842747684854No Hit
GCCTGGGACAACGCTGGCGGGCGCGTCACGACCGACGACGTGCGAAAGGT22010.10859107885557535No Hit
ATTTTAGAGTGATCGCTTACACTGAAAAATATTTTGGCCTAAGTTTCATA20720.10222658581951483No Hit
CCGTAAGCATTGGGAGCGCCGCCGACGGCCGGCAAGGCCGCCGTTGCGGG20690.10207857435355991No Hit
CTTTCAGACTCGCAGAAGGCCTGGGCCGCGAACCAACTGACATGGGTGAC20290.10010508814082798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)