FastQCFastQC Report
Mon 10 May 2021
HGJM2BGXJ_n02_ReSeq_1981_d06_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJM2BGXJ_n02_ReSeq_1981_d06_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1755741
Sequences flagged as poor quality0
Sequence length151
%GC47

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCTGGACCTTCCCTGGTATGGCTGGGTACAGCCGTCACAGGCTTTTGT36330.20692118028798095No Hit
GCTATGTTGTCTGTGTGAATGGTGCCATTTTTGGAGAGCATGGGGCCATA25330.1442695705118238No Hit
GTGTGAATGGTGCCATTTTTGGAGAGCATGGGGCCATAGGAGCCCATGGA25320.14421261450293638No Hit
TCCCCACACGGCTGCTCGGCGTGCTTTCTCCTGGGCTGATGTGCCCCTTC21080.12006326673467213No Hit
GTTCTGGAAGGAGGGGTCTGCCAAGGCAAGTATCTAAAAATACCAGATTT19150.10907075701940092No Hit
TTCCAGAACTGATTCCCTTCTGCGTGCTCTCTCTCTCTCTCTCAGCTCCT19110.10884293298385125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)