FastQCFastQC Report
Mon 10 May 2021
HGJM2BGXJ_n01_ReSeq_2868_d04_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJM2BGXJ_n01_ReSeq_2868_d04_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGGAAGGTGTCGGGCTTGAAGACACCATCGCTTAGCTTGTTGTGCTGG11.7241379310344827No Hit
GGGAGCCCGGTGCGGGACTCGTCCCCATGCCCCCGGGATCATGCCCGCCG11.7241379310344827No Hit
CTGTAAGTGGGGAGACCAAGCACTTGAGAGGCTAAGGGTCTTCTCCAGCA11.7241379310344827No Hit
GCGGAGGGGCCGGATGTGTCCTTGCCCCGTTGTCCCGTGGAAAGTGCCCT11.7241379310344827No Hit
GAATTTCATCATCACCAGACCTGCTTCACATGAAATGCTGAGAGACGTAC11.7241379310344827No Hit
AAATTAATACAATGAAACAAAATTCACAGAATGCAGTAAAACAGGTTCTA11.7241379310344827No Hit
AATTCCATTATCAGTTGTAGTGCCCTTCATTGGCTCTTGTTACAGTGTTT11.7241379310344827No Hit
GTACAAGGAGAGGCCACGATGGGCCCTGTGGGATCAAACCCACACAATAC11.7241379310344827No Hit
TTCCAGACTCGAAGTCAATCCGTGCATCAATTAGGGCCCTAGACACCATG11.7241379310344827No Hit
GTCCTAAACCACAGACCCGTCAGACATCAGCTCAAGGCCGGGAATATAAG11.7241379310344827No Hit
GAGCAAAAGCAGGGGCGGACCCAAGACGGGAGCGTGTCTACAGCATTTTC11.7241379310344827No Hit
CATATGCCTGTGTGGCTCGGTTGGTTAAATTTCTGCCTTTGGCTCAGGTC11.7241379310344827No Hit
GGGAGAGGGTGAAGCAGGCTCCCCGCTGTGCAAGGAGCCTGACTCTGGCC11.7241379310344827No Hit
GCTCAATCCCAGGACCCTGAGATCATGACCTGAGCCAAAGGCAGCGGCTT11.7241379310344827No Hit
GCTTGCCCTCGGCCTTGGGAATATTGTTCCATAAACCTGAAAACCCAGAG11.7241379310344827No Hit
CAGATATGCTCTACATATTTAGTTGCTCCATGCTGGGTGGGTACATATTT11.7241379310344827No Hit
CCTTTAGCGCTCTGTCCTTTCTGTAATTAGAGCCAGGCATCGCCAGCGTG11.7241379310344827No Hit
GCCAGCGGCCAACGCAGTATCTGGAAAGTGTGCCAGCATCAGGGGGATCC11.7241379310344827No Hit
GTTCCTGATTCCATGTATCTGCCTCTACTTCCAGTCTCCTACATTGGCAT11.7241379310344827No Hit
GCGTTCCTTCCTCTTGTTTTTCTGGCAGAGTTGGAGAAGGATTGGTATTC11.7241379310344827No Hit
AGCGAAAGCAGGCTCAGTGAGAAAGAAGCGCAGAGTTTCTGGAACGGAAA11.7241379310344827No Hit
TTCCAACACTGTGTCAAGCTTTCAGGTATACTGCTTTCTTTGGCATGTCC11.7241379310344827No Hit
CCCTGGGACCTGCCCGTCATGCCCCTCCGACTTTCAATTCTGTTCTTGTG11.7241379310344827No Hit
GTTCAGAGAGTTCAGTATCAGAACTAAATTTATTTGTAGCACACCTAGCT11.7241379310344827No Hit
ACTCCAATGTTGATTAAATGAGGAAACAGAGGAAAAGAGTTCAAAGAACT11.7241379310344827No Hit
CTGTTCATTGATGCTTAATGCTGGTCCATATCTTTTGTCTTCTTTGCCGA11.7241379310344827No Hit
CTCCTTTATTGCCCGGGCTCAGGTCTGGCCCCTGGGTCCTGCTCCCTCTC11.7241379310344827No Hit
GTAGGACACCCAGCTGCTGTCAACAGAGCGCTTGGTGTGGGGGAAATCCG11.7241379310344827No Hit
GTTTTCGAACAGAGTCACTGAAAAGGCATTTTCTGTTTCAACCAGTCAAA11.7241379310344827No Hit
CGATATGGGGCTCAATCCCAGGATCCTGGGATCATGACCTGAGCCGAAGG11.7241379310344827No Hit
GCCCACGAACCCAATTGGTTGTTCAGTAGAATGTTGTTTAGTCTCTGCGT11.7241379310344827No Hit
GCCACCTAGTTGCCCTGGTTAATCTATTTTTATTAAATATATTTATTGTC11.7241379310344827No Hit
TCTTATGACGCTGAGATTATGACCTGAGCTGAAATTAAGAGTCAATTGCT11.7241379310344827No Hit
GGATTTGCCTTTTAAAAAGAAGGTATACTTCTTCTGAGAACAGAGAAGGG11.7241379310344827No Hit
GACTCAGAGTCTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCG11.7241379310344827No Hit
CATATCGTGATCCCAGGGTCCTGGGATCGAGCCCCATGTTGGGCTCTCTG11.7241379310344827No Hit
GAGGAAGTAGGCATCCCAGTGAGCAAGGAGCCCAATGCGCGGCTCGATCC11.7241379310344827No Hit
GAGCAAAAGCAGGTACTGATCCAAAATGGAAGACTTTGTGCGACAGTGCT11.7241379310344827No Hit
TCTTGAGTTAGGCCTGTATCACTATATACTTCCTTCTTAGAACAACTTTT11.7241379310344827No Hit
GAAACACTCCCCACCTCATTTTAGGAGGCCAGCATGGCCCTTATCGAAAC11.7241379310344827No Hit
ATTCTGTAGAATTCTCCTCAATCCCTCCTCCTGACATTTTCCTTCAAGAA11.7241379310344827No Hit
GGCTAGAATCTGGTGCCAGGGAAACTAGTTGTGTGGCCTGGGCAAATCCC11.7241379310344827No Hit
ACTGAAGGGGGGCGGTGGACACCTGCTGAAGCTTAAATTAGTCTCATGGA11.7241379310344827No Hit
TTCATGGATTCCCAAGAGAAATAGCTCCATTCTCAACACTAGCCAAAGGG11.7241379310344827No Hit
CTACTGTGACAGCCGCAACCTCCGGAAGGTCCCTGTCATCCCCCCACGCA11.7241379310344827No Hit
AGTCTGGACAGAGGATATGAGCAGTTACAGCGCCCACACTACAACTCTGT11.7241379310344827No Hit
AATACACACAGAATTTTTAGAGTAGATATTGGAAGATTAGATGAGAAGAA11.7241379310344827No Hit
GTGCAGGAGGAGCCTGCCAAGGTCACGGGACTGTCCTCCTTCCTGACCTT11.7241379310344827No Hit
GCTGTAAATTCATAAACACAGAGACTAAACAACATTCTACTGAACAACCA11.7241379310344827No Hit
CTATTGGGTGGTGGGGAGGAAGCTTGGATCTCCAATCTTGATGTTGAAAC11.7241379310344827No Hit
GAGCAAAAGCAGGGTGACAAAAACATAATGGATTACAACACTGTGTCAAG11.7241379310344827No Hit
TTAACCCACTGAGCGACCCAGGTGCCCCTTGAATGTCCATTCTTTTGGAA11.7241379310344827No Hit
ATGCTGCTAAATGATGCTATGACCTTGGACTCTTTTTTTTTTTAAACTAT11.7241379310344827No Hit
GTGCCAACAATGGTCAAAATACGTTATTAGGATGTCCAGGAAATTATAGC11.7241379310344827No Hit
TTGTACCATTAACCCATTTCTGCCACCACGATAGAAAAGCAAACGGGCCC11.7241379310344827No Hit
GTCCTTAGAGATCCCACAATTCAGTTGTTTTCAGACTGTGCCCCCAGTTC11.7241379310344827No Hit
GGTTACCAGCGTGCATCTTTCTCCGGCCCACCCCCTCTTGGAGCGCTTTA11.7241379310344827No Hit
GTATATACATACATATATACTTACACAGTTTGAGCATTCACAGGCCACTA11.7241379310344827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)