FastQCFastQC Report
Mon 10 May 2021
HGJM2BGXJ_n01_ReSeq_2238_d12_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJM2BGXJ_n01_ReSeq_2238_d12_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTTAATTTCCATAACTGTCTCAAAAGTGACCATAAGCTCTCCTGAATC11.282051282051282No Hit
ACAGCAAGCAATGAAGATAAAATCTGCATCGCCCACAAGAAAACAAACTC11.282051282051282No Hit
AAACAAGGTAGTTATTTAATCCAGCTCTATGATGACAAAATCCCCATCTT11.282051282051282No Hit
CCCAGGTGCTCCCAAGCTGCAAGCTTAAAAAAATTTTCTCTTTGTCTACA11.282051282051282No Hit
CATCACATCCTGGGGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCAT11.282051282051282No Hit
GCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAG11.282051282051282No Hit
ATCCTGCACGGTGATTGTCTTACCACCAAAGCGCAGTTGTTCTCCTGCGC11.282051282051282No Hit
GGTCCTTATTCCATTTCAATAGGTCATGCAGAAAAAATTCAGCCACTAAC11.282051282051282No Hit
GGAAGAAACGCACCCCACCTCAATTTATGAGCCCAGCACCGCCCTTAACG11.282051282051282No Hit
GCTTCCTGTCCGTAACGAAATGGGGGCATTCGGCGATTGTGAATACCAGC11.282051282051282No Hit
GTGGGGCGCCCCCAGCAGTGACCGGATGCTGTGGTACAGCAGCCACTGTC11.282051282051282No Hit
GGGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGGACTCCGGG11.282051282051282No Hit
CCATATAGTGGAGCGGATTGTGCACCAAGAAACTGACGAGGCACTTAATA11.282051282051282No Hit
GTATATGAGACCCATTCAACTGCCAAGCGCACCAGTTGAGTAACAGAGTG11.282051282051282No Hit
CATGAGAATTTCCTTCACACAATCCGGAAACAACCACTATGAATGTTTGT11.282051282051282No Hit
CTATTACCATCTAGGATGGCACACTCTTGTTGGGCAGAATTCTTGAATCA11.282051282051282No Hit
TCGTATATGCTGAATATGGTTTAACCGAATCGGGAGGCGTGGTTCGTTTT11.282051282051282No Hit
GACCATACGTGATACCAGGACCAAGAGAGGAGCGAAAAAGCCCCAGTGAT11.282051282051282No Hit
GCAAAAGCAGGACGGATAAGCAAAAGTAGGCTGGATAAGACGCGCCAGCG11.282051282051282No Hit
CGCTAGTTCCTACCAAAGAATCCAAATCTTCCCAGACACAACCTGGAATG11.282051282051282No Hit
GGATAAGACGCGCCAGCGTCGCATCCGGCATTTATTCCGCACCAACGCAA11.282051282051282No Hit
GCCTAGTACCAATCAGATATCATGCATGATTAGTGGGATCCTCAAACTCG11.282051282051282No Hit
GCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAC11.282051282051282No Hit
AAGAAAAGCAATCAGCACCAATACCACACTATAATACCTCAAACTTGTCT11.282051282051282No Hit
AGAATCCACAATATCAAGAGCAATATCCCAAAGATACTTGCTGCAACAAC11.282051282051282No Hit
AGAATGTACTATGAACAATTACAGCCCAACAAGCTGGATAATCCAAAAGA11.282051282051282No Hit
AAATTAATACAATGAAACAAAATTAACAGAATGCAGTAAAACAGGTTCTA11.282051282051282No Hit
TCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCA11.282051282051282No Hit
ACTATAAACTTCCTTCTTAGAACAACTTTTTTTTTTTTTAAGTTGGCTCT11.282051282051282No Hit
GTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGC11.282051282051282No Hit
CTAATTAAAATACTACTACATGAAACTGCAAGAAATGCAGTAAAACTCTC11.282051282051282No Hit
GGATCAAGAACTGAGCTGAAGGCAGATGCTTAACTGACTGAGCTCCTCGG11.282051282051282No Hit
GGTTAGGACATCTGGTCTCTCGGTCTCGACTCCCACTGCCAGGGTCTGAC11.282051282051282No Hit
GTACTGACATTGTGCAGCGAAAACGGGCTGTACACCTACAGCAACCAGCA11.282051282051282No Hit
TTTCTGATGTCATCGGTACAAATGGATCAAGGTGAACAACTAAAGGAACT11.282051282051282No Hit
GCTATAATCCAATGATTGTCGACCTTGCGGAAAAGACAATGAACGAATAT11.282051282051282No Hit
CGCCAGGCAAATTCTGTTTCATTAACCAGCTTGTCGCCGGTTAATCTAAT11.282051282051282No Hit
CCCATGGTCCGGCCAAGAGCATGGAATATGATGCCGTTGCAACTACACAT11.282051282051282No Hit
GTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTG11.282051282051282No Hit
CTGCTGTTTTCTTTGTTCCATTTGCAGGACAGCCTGCTGCAACTCTCTCT11.282051282051282No Hit
GTATTAGGCTGATTTTTCAATTGAGATAATCTAACTGGAAGGGAGATAAT11.282051282051282No Hit
GGGCATCAGCAATCTGTTCACAACTGGCACATACTAGGCCAAGAGCCACT11.282051282051282No Hit
GCACCATGCACCATCTGTCATCTCCCTTCAGTCAACCTGCAAATAGGTAA11.282051282051282No Hit
ATATGCAAAGGCTCTTAAGAATGTACTATGAACAATTACACCCCAACAAG11.282051282051282No Hit
TTTCGTCAACTGAGGTGATTATGGGCTTCAGACTGTTGTGGAAAAATGGC11.282051282051282No Hit
GAGCGGAAGACAGACGCTTAACCGACTGAGCCACCCAGACACTCCCTATT11.282051282051282No Hit
CCACAAGAGCATAAAAATTTGGTGAGAAAACAATTTGCAACAATTTTACA11.282051282051282No Hit
ACCCGGCCCCTTGCGGGTACTGTCGGTGTTTACCTTGCGCTTTTTATTTC11.282051282051282No Hit
GTAAAATAGTGAGTCACATGTGCGTTTCCAGGAATGAACAAGGAATAACC11.282051282051282No Hit
AAATAACACAAATCAATCTACAGGAAATGTCAACCCAATTCATAAATCAA11.282051282051282No Hit
GCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAAGG11.282051282051282No Hit
GAAAAGACGATCAAGAATCCACAATATAAAGAGAAATATCCCAATGAAAC11.282051282051282No Hit
GCCCTTGGGGTTAGGCAGCATAATAGCATCCCTACCAAGGTTTTGATATC11.282051282051282No Hit
CTCTGGTGTTGCGACCACAGGTGACACCATCTCTAAAAAGATGGAAAGCT11.282051282051282No Hit
GTCTTCCCTATGTCCTCACATGTCAGAAGGGGCAAGAGACATATCTGGGT11.282051282051282No Hit
ATAAAAAATTTAAAAAAAACAACAAAAAAAATAACATAGCAACAAATATC11.282051282051282No Hit
GGCGATAATGGACGAAGAACAAGGATTGCATATCAGAGAATGTCCAACAT11.282051282051282No Hit
AAGCAGGACGGATAAGCAAAAGTAGGCTGGATAAGACGCGCCAGCGTCGC11.282051282051282No Hit
TTGCCGCTTAGTGTCACCATGGTAGGAGTACCTTGCAGCGGGATTGTTGA11.282051282051282No Hit
TGCTGTAGGTGTACAGCCCGTTTTCGCTGCACAATGTCAGTACGGAGCCT11.282051282051282No Hit
TCCTGGCAGAAGGCACACATCAGCTGTGACTCAGGAGCTCTCGGACTTGC11.282051282051282No Hit
CACCAATCCCAGAACCCTGGGATCTTGACCTGAGCCGAAGACAGATATGC11.282051282051282No Hit
TTAAAAAACAAGTAATAAATGCTACTACAATTGAGTTAAGACCACAAAGT11.282051282051282No Hit
GTTGTAGGTGGCGCCTGCTGTGAGCATCTGTACGAATTTCGAGTTTTTGT11.282051282051282No Hit
TTATTAAACAATTCTAAACTAATAGATTTCAATACGAAATCTAATTGACC11.282051282051282No Hit
ATTTGGGTCACCAGGTTTTCCGGGCTCAGCCACCCCGTAAATAACTGCGG11.282051282051282No Hit
CATCCACAGCATTCTGCTGTTCCTGCCGATACACTTCCCTCATAGACTCA11.282051282051282No Hit
GCTTCATGTATTCAGACTTCAATTTCATTGACGAACGAGGCGAATCAATA11.282051282051282No Hit
TTTCGACGGCAGGTGTCTGCACGACGCTGACCGAGGCGACTAACCCGTGT11.282051282051282No Hit
CAATATGGGGAAGACCCGAAAATTGAAACAAATAAGATCGCTGCAATATG11.282051282051282No Hit
GTTGTGGGTCGCGGTTAATGAGCGGGATCAGCCGGTTGGGTTTATGTTGT11.282051282051282No Hit
AACTTGCAGTTAACAAATCTATCAACGAGAGAAACCTCCCTAACTAAAAA11.282051282051282No Hit
GCATTGCTTATTCAGCAATGATCGACGCCTTTACTGATAAATTTGATGCG11.282051282051282No Hit
GAATTTCCTGCTCGGATGGAGCAGGGAGCGGTGGGGTAAGGCCGGGAAAG11.282051282051282No Hit
GTATGGAAGGGCCATCGCTCAACGGATATAAGGTACTCCGGGGATAACAG11.282051282051282No Hit
GCTATGCACAGAATTAGACACCTTCCCAAGGCAGCACAGTGAGCATCTGG11.282051282051282No Hit
ACCCAGGCATCCCTGAAGCCTGATTCTTGTCACAGACCCAGCTGCCTGTC11.282051282051282No Hit
CAGCAGAATTAAAACCACCCAATCATCCAAGCAATCCAATTAAATAATAA11.282051282051282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)