FastQCFastQC Report
Mon 10 May 2021
HGJM2BGXJ_n01_ReSeq_2233_d06_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJM2BGXJ_n01_ReSeq_2233_d06_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGCAGCTTGAGCTGGACCATGCTATGCACACTTGTTTGGTTCCCAAAT11.8181818181818181No Hit
CCCCGTGCTGACCAGGGACCTCATGCAGGACTCAATTACAGGACCATAAA11.8181818181818181No Hit
AGCTTGGGTCATGATCCCAGGGTCCTGGGATCAAGCTCCGCGTCTGGCTC11.8181818181818181No Hit
GCATATGTATTTATTGTAGAGACAGAAAGAGAGTGCACAAGCATATGCTA11.8181818181818181No Hit
AAGATAGCAGTACTCAAACAATAAAATGCAGTGATTGCCAATAATAAAAA11.8181818181818181No Hit
GGCTATTCCCGCTCAGAGTGCGTGCAGCGGAGAGGCCTCGTGGCCTGGCG11.8181818181818181No Hit
CTCTATCATCCCATCAGGCCCCCTCAAAGCACAGATCGCGCAGAGACTTG11.8181818181818181No Hit
CTGCAGAGCGAGCCCAGCCTCACCAGCGACGAGCTGCACCTGCCCGGGAA11.8181818181818181No Hit
GTGTGGTGGGTGGGATTTTATGCATTGTAATGAATCGATATACACGTGTT11.8181818181818181No Hit
GAGCACAGAGATCATTTTGAGGAGGAAGAGACGTTATGGAAACATACTTC11.8181818181818181No Hit
TCACTGTGGATCTGATTTGCCATTGAGGACTTGTCTTTAGGCAACACCAA11.8181818181818181No Hit
ATATAGAAGTATTGCATTTGACTCAAGGAACTTGCTGGGAGCAGATGTAC11.8181818181818181No Hit
GTTTATGTTCATCACAGATACTTGGGATGTCTCGATAAGGGCCGTGCTGG11.8181818181818181No Hit
TTCCAGGACATACTGACGAGGATGTCAAAAATGCAATTGGGGTCCTCATC11.8181818181818181No Hit
GCGTGTATCTTTTGCCTTATTCAAAAATGTTATACGGACCATCTGCAAAT11.8181818181818181No Hit
CATATATACTTACACAGTTTGAGCATTCACAGGCCACTAGAAGCCCATCT11.8181818181818181No Hit
CTACGAATCATCCACAGAAAAAAATGAATACCAATCCTTCTCCAACTCTG11.8181818181818181No Hit
GGCAGAAGCTTCAATGACTGAAACACACAATTGCACCTACTTAACCGCTT11.8181818181818181No Hit
TAATGACTGAGCCACTCAAGTGCCAACTGTGGCATACCTGTGAGAGCATA11.8181818181818181No Hit
GGGCAGTTAAACTATACAAGAAGCTGAAGAGGGAAATGACATTCCATGGA11.8181818181818181No Hit
GGAAATCACAAAGCCAGTACAGAGAGTTGCCATGTACTTACATTAATTGA11.8181818181818181No Hit
AGCAGGTAGAGTGGGAGAAGAAGCAGCAGACTTCCTGCTGAGCGTGGGGC11.8181818181818181No Hit
GAAATAATCAAAACTGTGATAAAAAATAAAAAATAATTTAATTAAAATAA11.8181818181818181No Hit
ATTTAAGGAAAGGAGAATACACAGAGAATATAGTCAAAGCAGTGGATACA11.8181818181818181No Hit
TGTCCATACCATGGAGCAATTAGATTCCCATTGGATCGTACTCGCAATGT11.8181818181818181No Hit
ATTTTACTCTCTGCCTTTTCCTCTTTGACCACTTACCGTGTGAAATTCCA11.8181818181818181No Hit
GAATATAAAAAATACGACCACAATAGGAGAACCAAAAATATGAAAGAACT11.8181818181818181No Hit
ATGGTGGAACAGATCTTCAAGATCTCAGCAAATTCTTCTTTCTTAATCCT11.8181818181818181No Hit
GTTTTAAATGTATGTCTGTATGTCTTCCAAAAGGTACTGTGACCTTCTGA11.8181818181818181No Hit
TTTCAGAAGAAGCTTTAATGGATCCAAAAAAGGGAGAATGTTGTCCACAG11.8181818181818181No Hit
GCTCACCCTCCGCGGCCAACGGCCTCCCACATACCAATAAACAATGTCCA11.8181818181818181No Hit
GATGTAGCACTCTTTGTGACTGCTTCTTTTTAAATGAGAATTATCCACAG11.8181818181818181No Hit
AATACCATTATCAGTTGTAGTGCCCTTCATTGGCTCTTGTTACAGTGTTT11.8181818181818181No Hit
ACCCCGAGATCATGACATGAGCCAAAGGCAGAGGCTTAACCCACTGAGCC11.8181818181818181No Hit
ATGCCCAGTGTGGGGTTGAAACTCAAAACCACAAGATCAGGAGTCACAGA11.8181818181818181No Hit
GCTCTACACAGAGTCTACTTAAGATTCTGTTTCCCTCTGCCCCGCCCCCC11.8181818181818181No Hit
AGAATCCACAATATCAAGTGCAATATCCCAATGATACTTGCTGCAACAAC11.8181818181818181No Hit
TGGTAGGCCCTTGTCATAAGTGCACCCGGAAAACTCCGAGCGAGAAGCGC11.8181818181818181No Hit
ATTGAGTTGAACCTTCACAACATGAAGAGGAAAGAAATGTGGTGACTTCA11.8181818181818181No Hit
CTATTAACTTTGGACTTTATTTGTTCTTTTCTGTTACCTTGAGGTATCAA11.8181818181818181No Hit
GGACTTTGGAATCATGACCTGAGCTGAAGGCAGACACTTAACAACTGAGC11.8181818181818181No Hit
CCATCTTTTCCAACCACAGTGGTATAGAACTAGAAATCAATTACAAGAAG11.8181818181818181No Hit
CCTTGTGGGCAGGTGTGGACAGGTCCTTACTGTTGATCTCTGCTATACTG11.8181818181818181No Hit
AGAGAGAGAGGGAGAAGCAGGCTTCCCGCTGAGCAAGGAGCCCGATGTGG11.8181818181818181No Hit
GTTAGGCAGCTGACTCTTGATTTTGGCTCAAATCAAGAACCCAAGCTCCT11.8181818181818181No Hit
ATAATTGTACTGCATTAATTCCATTATCAGTTGTAGTGCCCTTCATTGGC11.8181818181818181No Hit
CTGTATTCCAGTAAGGCTAAAGCGGCACTATATTGTTACATTTGCTCCAC11.8181818181818181No Hit
GTCAACAGAGCGCTTGGTGTGGGGGAAATCCGTTCCAAACTGATGTCAGA11.8181818181818181No Hit
GATGGCGACTACCACCAACCCACTAATCAGGCATGAGAACAGAATGGTAC11.8181818181818181No Hit
GTTCCACTTAGATGCAGATTTTTTTCCCAATAAATACAATACAGCATACC11.8181818181818181No Hit
GGGGCAGAGGGAGAGGGGGAAACAGGCTTCCCGCTGAGCAGGGAGCCCCA11.8181818181818181No Hit
ATCCTATTAACTGTGAACCCTAAATGCTGAGCCCTTCCTCCTAGACCTGA11.8181818181818181No Hit
CTGTTGGATGAGCCAATGAAGGGCACGACATCTGATAGTGGGATTAAGGC11.8181818181818181No Hit
CTATTTAACCTTGGTTGAGTCCCTCTACAGAGGTTGGCTGCAGGACAACC11.8181818181818181No Hit
ACTGGGGAGTATTTCTTTCGGCCCGAAAGCAAAGCCTCTCCCCGAGAGCA11.8181818181818181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)