FastQCFastQC Report
Mon 10 May 2021
HGJM2BGXJ_n01_ReSeq_1983_d08_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJM2BGXJ_n01_ReSeq_1983_d08_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTAAAATTTGTAGAATAAGTTTCATGCCAATTTATACGCTTAGTGTAT13.125No Hit
TAATAGGCCCTCTTTGCGTGCGATTGGACCAGGCGATCATGGAAAAGAAC13.125No Hit
GATCTCAAGTATCTAAACATTTAAAAATTACCATTGTTGACCAAACTAAC13.125No Hit
GTTGCTGAGGGTGTAGCAGGCTCGTTGCTGCGCTTGGTGCGTTAGGTGGG13.125No Hit
TCATATAGGAGACCGGTTGGAATTTCTAGCATGGTGGAGGCCATGGTGTC13.125No Hit
GCCTCCAGGGGGTGGGGAAGGCAGCCCTGGTTCAGAATTCACCACTTCTG13.125No Hit
AGAGAAGATAGCGGAGTTACAAAGACAATTTGCTGAGGAACCAGTGGATA13.125No Hit
GCAGAGCGCGGTTGATGGTGCCCCAGAGGGAGGCAGATGGCAAGAAACTG13.125No Hit
CCTCTGAGGACACAGGGACGATGGTGTGCAGGTGGTGCTGGCCACGGCCA13.125No Hit
ACATAGTGTTCCCTGATAAATATTAGGAAATAAGTCAGGAGTAGATGGTT13.125No Hit
CCTTAATATAGGGAGGCAGATGGTTGTGATTACTAAGGCATACAATCAGA13.125No Hit
AGCAAAAGCAGGCCCGATCCCAGGCCCGATCCCAGGATCCTGAGATCATG13.125No Hit
AATCAGAAGTGATTAAAACACAGCCACACTGACTCTGAATTATGTTTACA13.125No Hit
ATTCAGCCCCTTGGAGCAGGTCCTGGTACAGTTCATGATGGTGTGGCAAC13.125No Hit
TCCCACATGTCTCTAGCCCTTCTGAACTCAACCTTATTTCTGGAGAAAGG13.125No Hit
GCTGAGTATGGAGGAGAGAACCTGGGACTTTCTGTGACAACCCACAAGGA13.125No Hit
GGGCCACGAGAACAGTGCCAGAAGGGCTGGTTCTTGGTACTAGCCTCTGC13.125No Hit
CTCATATTCTCAGAATCCATGATTTTTCAATAACTGCAAAACAATTTGTA13.125No Hit
GTGGGGGATGGCACAGGGTGTGGGGACCAGCCAGGCGGCAGAAGCACAGG13.125No Hit
GATTGTGCATGTAGCCCATGAGTTGTTACCAGAAATTCTCAAGGTTGAAC13.125No Hit
TATATATACATTTATCTGTTCAACTTCAGTGAAAGTTGGGAGGAAAAGGT13.125No Hit
TTATATCACTTGTCAACGGAAGACTGGGATCCCTTGGCATAAACACAACA13.125No Hit
CTCCAAGATAGAGTTTACAAATATTTTCTCCCATTCCATAAGTTGTATTT13.125No Hit
GATGTATATTCTGAAATGGGAGGCTGGTGTTTATAGCACCCTTGGGTGTT13.125No Hit
ACAGAGAGTAAATCCTGTCACTTTTTCCCATGTGTCCCACACCAACAAGG13.125No Hit
AGTGCCACGTGCCAGAAGACGGATGACCACATGCTCATCGTGAAATAGAA13.125No Hit
ATCTGAGGAGCATTTAAATGCACAAAAGTAGGCCCCACCCCTGCAGATTC13.125No Hit
AGATAAACTAACTCAAGGTCGCCAGACTTATGATTGGACATTGAACAGAA13.125No Hit
TTTCTTCTCTCTAGCATACTTAATTGTAGGAATGTAGCATGTAATATACA13.125No Hit
ATATAGCCCTTCAAGATCAAAGGTTCCAGGTTCCAGGTTGTACCTAAGTG13.125No Hit
CTTTTTTAACTAGCCATATTAAATTTTTGTAGAAGCTTTTTGCTCCAGCA13.125No Hit
GAGCAGCACTGTCCAAACCCGGGGAGATCAAGATAGGCTACAAGCCACAG13.125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)