FastQCFastQC Report
Mon 10 May 2021
HGJM2BGXJ_n01_ReSeq_1981_d06_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJM2BGXJ_n01_ReSeq_1981_d06_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1755741
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCTGGACCTTCCCTGGTATGGCTGGGTACAGCCGTCACAGGCTTTTGT33640.19160001389726616No Hit
GCTATGTTGTCTGTGTGAATGGTGCCATTTTTGGAGAGCATGGGGCCATA24750.14096612199635367No Hit
GTGTGAATGGTGCCATTTTTGGAGAGCATGGGGCCATAGGAGCCCATGGA22350.12729667986337392No Hit
TTCCAGAACTGATTCCCTTCTGCGTGCTCTCTCTCTCTCTCTCAGCTCCT20820.11858241050359934No Hit
GTTCTGGAAGGAGGGGTCTGCCAAGGCAAGTATCTAAAAATACCAGATTT19510.1111211733393479No Hit
TCCCCACACGGCTGCTCGGCGTGCTTTCTCCTGGGCTGATGTGCCCCTTC19270.10975422912604992No Hit
TCCGAGGACTGCAAGGCCCGAAAGCACTTCCTTCTTGTGGAGACTCAGCA17670.10064126770406343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)