FastQCFastQC Report
Mon 10 May 2021
HGJM2BGXJ_n01_ReSeq_1413_d02_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJM2BGXJ_n01_ReSeq_1413_d02_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3137
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTATTGCCTCTGCTAGAAATGTTCTTCCCACATCCCCACCTTGTGGCT50.1593879502709595No Hit
CCCTCAGACAACCCCTTACTTGGATGGACTTGACAGATACACACAGAACT50.1593879502709595No Hit
TCCCTCAATGATCCCCCATCCAGACAGAAGATCACAAAGGAAACATCACC40.1275103602167676No Hit
GAAGGGTACTCTCTGGTTGGGATAGATCCTTTCCGTCTGCTTCAGAACAG40.1275103602167676No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT40.1275103602167676No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)