HGJJWBCXY_l02n01_transplanta2_07.3510000008355a.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGJJWBCXY_l02n01_transplanta2_07.3510000008355a.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6872355
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAG	52988	0.7710311821784527	No Hit
TTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTA	28085	0.40866631598629577	No Hit
TGATCCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAG	24141	0.35127696401015374	No Hit
TTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAA	17638	0.25665146809208783	No Hit
CCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTA	15769	0.22945555053544234	No Hit
CAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTAG	15113	0.21991005994306173	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC	14801	0.215370131490588	TruSeq Adapter, Index 7 (100% over 51bp)
GATCCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGG	13693	0.19924756506321342	No Hit
CGGCAATCGGGCGGCGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTT	13688	0.199174809799552	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGAG	13618	0.19815623610829183	No Hit
CGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGT	13359	0.19438751345062938	No Hit
CCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACC	12869	0.18725749761180846	No Hit
TTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGT	12388	0.18025844124757817	No Hit
CTGACATGTGTGCGAGTCAACGGGTGAGTAAACCCGTAAGGCGCAAGGAAG	11495	0.16726435115764537	No Hit
TCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAAC	10730	0.1561327958174454	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC	10323	0.15021051735540436	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCTG	10181	0.14814426786741952	No Hit
GGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTC	9715	0.14136347729417353	No Hit
GTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATC	9679	0.14083963939581118	No Hit
CTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGA	9296	0.13526658619934506	No Hit
CCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAG	9020	0.1312504956452337	No Hit
TATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTAGATAG	8834	0.12854399983702822	No Hit
ATCCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGT	8322	0.12109386083809699	No Hit
CACGCTTTCACGGTTCGTATTCGTACTGAAAATCAGAATCAAACGAGCTTT	8124	0.11821275239710405	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAT	7791	0.1133672518372523	No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGCGGAGTCCTATAA	7212	0.1049421923052578	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	1705	40.51521	11
CGTATGC	1640	39.785664	44
GTATGCC	1660	39.17078	45
CACGTCT	1765	39.010437	14
ACGTCTG	1770	38.89882	15
TCGTATG	1720	38.19679	43
CTCGTAT	1720	37.93517	42
AGCACAC	1845	37.318924	10
CATCTCG	1750	37.156013	39
AGTCACC	1865	35.228863	28
TTTTTCC	7745	34.05467	1
TCGGAAG	2070	33.04392	3
GTACTCT	3780	32.679005	3
GAGCACA	2125	32.613384	9
CAGTCAC	2015	32.494698	27
TCTAGTT	3840	32.16676	7
CAGATCA	2045	32.125927	34
CACACGT	2220	31.31912	12
GAACTCC	2185	31.097229	21
ACTCCAG	2205	30.510834	23

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content