HGJJWBCXY_l02n01_transplanta2_03.351000000834c4.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGJJWBCXY_l02n01_transplanta2_03.351000000834c4.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5559159
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAG	35660	0.6414639336633473	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCC	16254	0.2923823549569278	TruSeq Adapter, Index 3 (100% over 51bp)
TTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTA	15141	0.272361340987009	No Hit
TGATCCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAG	12353	0.22220987023396888	No Hit
CGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGT	11149	0.20055191801493713	No Hit
TTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAA	10115	0.18195198230523718	No Hit
CGGCAATCGGGCGGCGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTT	9460	0.17016962457810614	No Hit
GGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTC	9058	0.16293831495015704	No Hit
CAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTAG	8117	0.14601129415438557	No Hit
CCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTA	7846	0.14113645607186268	No Hit
CCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACC	7560	0.13599179300322226	No Hit
GATCCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGG	7508	0.1350563997180149	No Hit
TTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGT	7497	0.13485852806152873	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTAT	7053	0.1268717084724506	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGAG	6967	0.12532471188537692	No Hit
GTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATC	6583	0.1184171922407688	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCTG	6555	0.11791351893334943	No Hit
CTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGA	6225	0.11197736923876435	No Hit
CCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAG	6118	0.11005261767112616	No Hit
TCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAAC	6039	0.1086315394109073	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	2060	37.572643	44
GCACACG	2170	37.43239	11
GTATGCC	2085	37.33796	45
TCGTATG	2220	35.168755	43
ACGTCTG	2330	35.0538	15
AGCACAC	2390	34.363316	10
CACACGT	2360	34.32342	12
TAGGCAT	2285	33.872322	35
CTCGTAT	2280	33.749844	42
TTAGGCA	2300	33.651413	34
CACGTCT	2435	33.635857	14
ACTTAGG	2350	33.030872	32
ACACGTC	2480	32.753338	13
CATCTCG	2390	32.102074	39
CACTTAG	2440	32.08915	31
ACTCCAG	2550	32.029263	23
CAGTCAC	2500	31.500704	27
GGCATCT	2430	31.481052	37
AGTCACT	2525	30.921204	28
TCACTTA	2525	30.920929	30

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content