HGJJWBCXY_l01n01_transplanta1_02.351000000834b7.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGJJWBCXY_l01n01_transplanta1_02.351000000834b7.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4108396
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAG	9920	0.24145676317472806	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	8924	0.2172137252592009	TruSeq Adapter, Index 2 (100% over 51bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6836	0.16639097107484283	No Hit
TTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTA	6160	0.14993686100366177	No Hit
CGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGT	4617	0.1123796245542056	No Hit
TTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAA	4325	0.1052722278962398	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4316	0.10505316430061756	No Hit
TGATCCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAG	4302	0.10471239870742742	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	1330	33.834633	44
ACGTCTG	1460	31.592123	15
GTATGCC	1440	31.562542	45
GCACACG	1490	30.956417	11
TCGTATG	1465	30.716766	43
CCGATGT	1485	30.302702	33
CACACGT	1575	29.285397	12
CGATGTA	1580	28.623806	34
CACGTCT	1620	28.610804	14
CTCGTAT	1595	28.495335	42
AGCACAC	1660	27.921726	10
TATCTCG	1665	27.432468	39
ACACGTC	1715	27.419529	13
CACCGAT	1780	25.660458	31
ACCGATG	1800	25.125338	32
AGTCACC	1910	24.14954	28
TCTCGTA	1945	23.830076	41
CAGTCAC	1990	23.178423	27
TGTATCT	1975	23.126616	37
TCGGAAG	1975	23.126616	3