FastQCFastQC Report
Wed 12 Oct 2022
HGJHJBGXM_n02_CHAR30_1_IDT.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJHJBGXM_n02_CHAR30_1_IDT.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8838541
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAACACGGATTAGGGAGTTTATCTGTAGTGCGAGTCTTTGCACGTTAA356950.4038562473150263No Hit
GGGGCGTAGTCTGCCATACGCAGGAAGACCCGCTGAACTGAAGCATCTCA236050.267068965341678No Hit
GGAACACGGATTAGGGAGTTTATCTGTAGTGCGAGTCTTTGCACGTTAAC202680.22931386526350897No Hit
GGGGAACACGGATTAGGGAGTTTATCTGTAGTGCGAGTCTTTGCACGTTA198290.2243469821546339No Hit
GGGCGTAGTCTGCCATACGCAGGAAGACCCGCTGAACTGAAGCATCTCAT181570.20542983281969274No Hit
GGGCAACACGGGGAAACTTACCAGGACCAGATGTTTTTTATGACTGACAG165100.1867955355980133No Hit
GGGGACGTAGTCTGCCATACGCAGGAAGACCCGCTGAACTGAAGCATCTC141150.15969830314754438No Hit
GGAGAACACGGATTAGGGAGTTTATCTGTAGTGCGAGTCTTTGCACGTTA124960.141380800292718No Hit
GGGACGTAGTCTGCCATACGCAGGAAGACCCGCTGAACTGAAGCATCTCA121190.13711539042473186No Hit
GGGAGAACACGGATTAGGGAGTTTATCTGTAGTGCGAGTCTTTGCACGTT93780.10610348472672129No Hit
GGGGGCGTAGTCTGCCATACGCAGGAAGACCCGCTGAACTGAAGCATCTC91780.10384066782062787No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)