FastQCFastQC Report
Wed 12 Oct 2022
HGJHJBGXM_n02_CHAR29_3_IDT.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJHJBGXM_n02_CHAR29_3_IDT.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9560378
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAACACGGATTAGGGAGTTTATCTGTAGTGCGAGTCTTTGCACGTTAA404450.4230481263397744No Hit
GGGGCGTAGTCTGCCATACGCAGGAAGACCCGCTGAACTGAAGCATCTCA266140.2783781143381569No Hit
GGAACACGGATTAGGGAGTTTATCTGTAGTGCGAGTCTTTGCACGTTAAC217640.2276479026247707No Hit
GGGGAACACGGATTAGGGAGTTTATCTGTAGTGCGAGTCTTTGCACGTTA210220.21988670322449594No Hit
GGGCGTAGTCTGCCATACGCAGGAAGACCCGCTGAACTGAAGCATCTCAT196380.20541028817061416No Hit
GGGCAACACGGGGAAACTTACCAGGACCAGATGTTTTTTATGACTGACAG188210.1968646009603386No Hit
GGGGACGTAGTCTGCCATACGCAGGAAGACCCGCTGAACTGAAGCATCTC178990.18722063081606188No Hit
GGGACGTAGTCTGCCATACGCAGGAAGACCCGCTGAACTGAAGCATCTCA148020.15482651418176144No Hit
GGAGAACACGGATTAGGGAGTTTATCTGTAGTGCGAGTCTTTGCACGTTA142630.1491886617872222No Hit
GGGGGCGTAGTCTGCCATACGCAGGAAGACCCGCTGAACTGAAGCATCTC97020.1014813431017058No Hit
GGGAGAACACGGATTAGGGAGTTTATCTGTAGTGCGAGTCTTTGCACGTT96370.10080145366637176No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)