FastQCFastQC Report
Wed 12 Oct 2022
HGJHJBGXM_n02_CHAR29_1_IL.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJHJBGXM_n02_CHAR29_1_IL.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences784187
Sequences flagged as poor quality0
Sequence length101
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTCTCTTATACACATCTGACGCTGCCGACGACCTTCGTGATGTGTAG67306585.82965542657554No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGACCTTCGTGATGTGTAGA35580.4537183095358633No Hit
ACTGTCTCTATACACATCTGACGCTGCCGACGACCTTCGTGATGTGTAGA15710.20033486910647585No Hit
ACTGTCTCTTAACACATCTGACGCTGCCGACGACCTTCGTGATGTGTAGA10230.1304535780368713No Hit
CCTGTCTCTTATACACATCTGACGCTGCCGACGACCTTCGTGATGTGTAG9360.11935928547655086No Hit
ACTGTCTCTTATACACATCTGACGCTGCCGACGCCCTTCGTGATGTGTAG9350.11923176487240927No Hit
TCTGTCTCTTATACACATCTGACGCTGCCGACGACCTTCGTGATGTGTAG8830.11260069345704533No Hit
ACTGTCTCTTATACACATCTGACGCTGCAGACGACCTTCGTGATGTGTAG8330.10622466324996462No Hit
ACTGTCTCTTATACACATCTGACGCTGACGACGACCTTCGTGATGTGTAG8280.10558706022925654No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)