FastQCFastQC Report
Wed 12 Oct 2022
HGJHJBGXM_n01_CHAR30_1_IL.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJHJBGXM_n01_CHAR30_1_IL.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6953131
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGTTACGGCATCGG783041.1261689158452501No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGTTACGGCATCGC215250.30957276657091604No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGTTACGGCATCTG150260.2161040831820945No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGTTACGGCATCTC104480.15026324112115821No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)