FastQCFastQC Report
Wed 12 Oct 2022
HGJHJBGXM_n01_CHAR29_1_IL.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJHJBGXM_n01_CHAR29_1_IL.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences784187
Sequences flagged as poor quality0
Sequence length101
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGCCATTAATCTC62392579.56329293905662No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGCCATTAATATC150281.9163796390401782No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGCCATTAAGCTC44870.5721849507834228No Hit
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGCCATTAATCTC38620.492484573194914No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGCCATTAATGTC33290.4245160911874336No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGCCATTAATCTCG32870.41916022581348583No Hit
TCTGTCTCTTATACACATCTCCGAGCCAACGAGACCTTGCCATTAATCTC19370.24700741022230668No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACATTGCCATTAATCTC11350.1447358857007321No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGCCATTAATCGC10000.12752060414161417No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGCCAGTAATCTC9340.11910424426826766No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGCCATTACTCTC9280.11833912064341796No Hit
TCTGTCTCTTATACACATCTCCGAGCCCCACGAGACCTTGCCATTAATCT9050.11540614674816084No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGGCATTAATCTC8150.10392929237541557No Hit
TCTGTCTCTTATACACATCTCCCGAGCCCACGAGACCTTGCCATTAATCT8010.10214400391743296No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGCCATTAATCTA8010.10214400391743296No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)