FastQCFastQC Report
Wed 12 Oct 2022
HGJHJBGXM_n01_CDC1080_3_IL.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJHJBGXM_n01_CDC1080_3_IL.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15900598
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACGACTGAGTAGATCTC628420.39521784023468803No Hit
TGGCAGCGGAAGCGCTCATTGCCGATTGTGATGACGTTGCCATCTGGAAG209530.13177491815087708No Hit
TGTGGGAAACACCATCACCAGCATCGAAAACGATACCTGTTGTACGGCCA163120.10258733665236992No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)