FastQCFastQC Report
Wed 12 Oct 2022
HGJHJBGXM_n01_CDC1080_2_IL.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGJHJBGXM_n01_CDC1080_2_IL.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14953735
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATCAAGGCAATCTC213710.14291412814256774No Hit
TGTGGGAAACACCATCACCAGCATCGAAAACGATACCTGTTGTACGGCCA176630.11811764753086772No Hit
TGGCAGCGGAAGCGCTCATTGCCGATTGTGATGACGTTGCCATCTGGAAG166350.11124311083485162No Hit
TGGGCAGCGGAAGCGCTCATTGCCGATTGTGATGACGTTGCCATCTGGAA156750.1048233100292335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)