HGHTTBGX2_n01_mt_atac_05.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGHTTBGX2_n01_mt_atac_05.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	74529763
Sequences flagged as poor quality	0
Sequence length	75
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	474456	0.6365993676915356	RNA PCR Primer, Index 27 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGGGGG	56275	61.546703	69
CCGTCTT	80385	58.57059	47
GCTTGAA	80825	57.60255	56
GCCGTCT	82115	57.201218	46
CTTGAAA	81960	56.9764	57
AAAGGGG	61520	56.198414	68
TATGCCG	85040	55.79212	43
TCGTATG	84915	55.787857	40
CGTATGC	85265	55.781265	41
ATGCCGT	85800	55.140625	44
CTCGTAT	85100	54.845123	39
TGCCGTC	87010	54.297558	45
TCTCGTA	86100	53.931404	38
GTATGCC	89325	53.54932	42
TGAAAAA	102545	46.684437	59
TTCTGCT	105505	43.81659	52
GAAAAAA	112450	42.723015	60
ATCTCGT	113370	41.132698	37
TGCTTGA	119255	38.886665	55
AATGGGG	14930	35.065914	68