HGHK2BGX9_n02_undetermined.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGHK2BGX9_n02_undetermined.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26894864
Sequences flagged as poor quality	0
Sequence length	49
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2398594	8.918409105917027	No Hit
GACTGGGAGGGTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	170522	0.6340318359668968	No Hit
GACTGGGAGGGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	161960	0.6021967614337073	No Hit
GACTGGGAGGGTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	90524	0.3365847100026236	No Hit
AAGTATCGTTTCGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	45781	0.1702220914744168	No Hit
TTCCGCCTCTCTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	45365	0.1686753277503095	No Hit
GCATTCTGTCACCTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	42148	0.15671393616268145	No Hit
GCATTCTGTCACCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	41258	0.1534047541567788	No Hit
CTCTATTCAGACCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	32298	0.12008984317600564	No Hit
GCATTCTGTCACCTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	31812	0.11828280670986105	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGAAAC	143045	42.52989	13
CGAAACA	141875	42.463234	14
AGGACGA	147880	42.43055	10
AACACCG	142115	42.40896	17
ACACCGG	39405	41.998207	18
ACACCGA	41000	41.98503	18
TTGTGGA	150595	41.971493	2
CGTTTCG	16845	41.946114	7
ACACCGC	39000	41.87193	18
ACTGGGA	88035	41.698746	2
TTTCGCA	17230	41.60934	9
GGACGAA	148785	41.457184	11
ACACCGT	28360	41.385124	18
GACTGGG	88965	41.216274	1
TGTGGAA	154905	41.1127	3
GACGAAA	147345	41.09448	12
GGTATTC	18820	41.03974	10
GTCCGAC	5780	40.919712	4
GGGTATT	91115	40.909054	9
GTGGAAA	157095	40.832153	4