FastQCFastQC Report
Fri 4 Jan 2019
HGHK2BGX9_n01_ADT3P.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGHK2BGX9_n01_ADT3P.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46051982
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTGAAC136700.017.6923391
TGACGGC106200.017.6404951
CAATGGA137450.017.3292188
GGGACCT89850.017.2548471
GCGCGAT84500.016.9032021
TCTGGAA158650.016.9026281
CGCTGGA109650.016.8938961
CTCGAAA131100.016.8306271
CGGACTG95100.016.8281731
GACTAAC122400.016.8011551
ATAACGC118350.016.7929531
CTGCGGA94500.016.7868371
TGACAAC145600.016.7688731
TGGACGC107400.016.7262861
TGCGGGT106700.016.6766571
TGGACTC131000.016.6032473
TGGCTGG118100.016.5574861
TTGAACG122550.016.5520611
AAGACCT190750.016.5384451
GGCGACT108400.016.5350761
Produced by FastQC (version 0.11.5)