HGHGWBGX2_n02_ech_18.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGHGWBGX2_n02_ech_18.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7051274
Sequences flagged as poor quality	0
Sequence length	75
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGGAGTTCATGCGCTTCAAGGTGCGCAT	15821	0.22437080164520623	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	12309	0.17456419932057668	No Hit
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGGAGTTCATGCGCTTCA	12127	0.1719831054643459	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGACGATGAC	10618	0.15058271739263004	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGATCTCGAACTCGTGGCCGTTCACGGA	9497	0.13468488105837328	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTGGCGGCCCTCGGCGCGCTCGTACTGT	9225	0.13082742210840198	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAACTGAGGGGACAGGATGTCCCAGGCGA	9025	0.12799105523342305	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGAGGTTAGATAGTAGGACAGGATACAT	8364	0.11861686271161778	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACTCTAG	7175	37.496994	5
TACTCTA	5125	36.67663	4
CTCTAGT	5560	33.874466	6
TTGTACT	5645	33.300453	1
TCTAGTT	5775	32.613567	7
GTACTCT	5805	32.558323	3
CTAGTTG	5605	32.43341	8
TGTACTC	6025	31.425823	2
TAGTTGT	6285	29.418898	9
GTTACCT	6150	29.39388	14
ACTACCC	4395	28.726105	6
ACCTCTA	6330	28.55966	17
CTAATGC	6215	28.144415	21
CTACCCT	4535	27.611307	7
TACCTCT	6745	27.518759	16
TTACCTC	6690	27.435377	15
TACCCTA	4630	26.746756	8
CCTCTAA	6810	26.59787	18
TGTTACC	6910	26.410795	13
GACACCT	6330	26.327457	30