HGHGWBGX2_n02_ech_02.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGHGWBGX2_n02_ech_02.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10167624
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	24044	0.23647609313641021	No Hit
CTGTTACTACCCTACACTCATACTTGGATCACAGCCACTAGTAGCCTATGCTCCTAGTACATAGACACCCTACAG	23283	0.22899155200861088	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGAGGTTAGATAGTAGGACAGGATACAT	21859	0.21498631341992977	No Hit
CCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTAGATAGTAGGACTGTTTGATCAATC	13507	0.13284322866384515	No Hit
CAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTAGATAGTAGGACTGTTTGATCAATCT	13355	0.13134828746617697	No Hit
TGATCCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTAGATAGTAGGACTGTTTGATC	12134	0.1193395821875396	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TTGTACT	12285	39.81338	1
TACTCTA	13320	37.00262	4
ACTCTAG	13645	36.224888	5
TGTACTC	13765	35.631165	2
GTACTCT	14100	34.93172	3
TCTAGTT	14370	34.614994	7
CTCTAGT	14370	34.374607	6
CTGTTAC	11125	34.353245	1
CTAGTTG	14455	33.767128	8
ACTACCC	11345	33.567276	6
CTACCCT	11940	31.663727	7
TACTACC	12135	31.494474	5
TACCCTA	12045	31.27315	8
GTTACTA	12175	31.247658	3
ACCTCTA	15705	30.20481	17
GTTACCT	15875	29.880032	14
TAGTTGT	16465	29.876272	9
TTACTAC	12895	29.636227	4
TGTTACT	13095	29.157398	2
CCTACAC	13045	28.930416	11