FastQCFastQC Report
Thu 13 Dec 2018
HGHCCBGX9_n01_nk15.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGHCCBGX9_n01_nk15.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18556822
Sequences flagged as poor quality0
Sequence length76
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG66850.013.82165146
CTCGTAT61000.013.77167642
TCGTATG55300.013.73524743
CGTATGC64850.013.3317344
ATGCCGT62250.012.87515247
TATCTCG82650.012.83228539
TCTCGTA69150.012.6547441
ATCTCGT82450.012.05679640
GTATGCC85750.011.18358145
GCTTGAA75550.010.84029659
CCGTCTT73850.010.52101350
GCTTATC172050.010.49697536
TATCGCG40550.010.09948439
TAGCTTA188300.09.94388734
TTATCGC42450.09.812201538
AGCTTAT187400.09.76758435
TGCCGTC83850.09.5167148
TGCTTGA81750.09.37596758
CTTATCG61950.09.32213237
ACTAGCT202050.09.28450332
Produced by FastQC (version 0.11.5)