FastQCFastQC Report
Thu 13 Dec 2018
HGHCCBGX9_n01_nk07.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGHCCBGX9_n01_nk07.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22974639
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT157450.018.82774547
TATGCCG166900.018.51683246
CGTATGC169550.018.0432144
TCGTATG154250.017.9723143
CCGTCTT154350.017.82262250
GCTTGAA150950.017.52875359
CTCGTAT84050.017.36643842
TGCCGTC166900.017.13252648
CGTCTTC154100.016.80671751
TCTCGTA89800.016.64427641
GTCGTAT90600.016.18818942
GTATGCC195550.016.0009545
GCCGTCT167700.015.90294749
TGTCGTA94850.015.57358141
ATCTCGT97700.015.47752840
TGCTTGA170100.015.16450958
ATGTCGT106550.014.38908240
GATCTCG113200.013.63649439
GATGTCG117050.013.27767639
AAAAGGG182500.012.50378170
Produced by FastQC (version 0.11.5)