HGGLTBGX9_n01_2_NLP7_BIO_3_R1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGGLTBGX9_n01_2_NLP7_BIO_3_R1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15873774
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC	2342857	14.759294166592015	TruSeq Adapter, Index 2 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATG	329952	2.0785983219869455	TruSeq Adapter, Index 2 (100% over 49bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCGCGTATGC	32928	0.20743649241824913	TruSeq Adapter, Index 2 (98% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTTTG	22327	0.1406533821131635	TruSeq Adapter, Index 2 (97% over 49bp)
ACACTCTTTCCCTACACGACGCTCTTCCGAGATCGGAAGAGCACACGTCT	20301	0.12789019170866361	Illumina Single End PCR Primer 1 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAAAGGG	226640	66.6994	70
TGCTTGA	289845	59.628586	58
TCTCGTA	294435	59.366264	41
CGTATGC	295955	59.33954	44
TCGTATG	293220	59.238808	43
CTCGTAT	294745	59.190258	42
TATGCCG	296915	59.090973	46
GTATGCC	298960	59.04792	45
GCCGTCT	293305	58.914783	49
ATGCCGT	296450	58.799824	47
TCTGCTT	295620	58.75346	56
CCGTCTT	296760	58.639915	50
CTGCTTG	294220	58.51776	57
CTTCTGC	297485	58.505753	54
TTCTGCT	295275	58.412464	55
ATCTCGT	300470	58.397053	40
GCTTGAA	298095	58.37864	59
TCTTCTG	297480	58.168827	53
TATCTCG	301830	58.02351	39
TGCCGTC	300555	57.780384	48