HGGLTBGX9_n01_1_NLP7_BIO_1_R1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGGLTBGX9_n01_1_NLP7_BIO_1_R1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14424453
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC	2862040	19.841584287459636	TruSeq Adapter, Index 1 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATG	525828	3.6453930003446233	TruSeq Adapter, Index 1 (100% over 49bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCC	27596	0.19131401377924	TruSeq Adapter, Index 1 (100% over 50bp)
ACACTCTTTCCCTACACGACGCTCTTCCGAGATCGGAAGAGCACACGTCT	15940	0.11050679010150334	Illumina Single End PCR Primer 1 (96% over 30bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATATCGTATGC	15457	0.10715830957333357	TruSeq Adapter, Index 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAAAGGG	277365	67.09523	70
TATGCCG	380620	56.60934	46
GTATGCC	380800	56.586514	45
CGTATGC	380955	56.55929	44
TCTCGTA	377075	56.544437	41
GCCGTCT	380655	56.53625	49
CTCGTAT	379275	56.458897	42
ATGCCGT	381750	56.428154	47
TCGTATG	382440	56.39053	43
ATCTCGT	376505	56.348633	40
CCGTCTT	382815	56.27074	50
TGCTTGA	382455	56.257717	58
TGCCGTC	383195	56.201412	48
GCTTGAA	383800	56.093777	59
CGATCTC	374775	56.0628	38
CTGCTTG	385330	55.795097	57
TCTGCTT	386080	55.744846	56
CTTGAAA	386930	55.732273	60
CTTCTGC	386510	55.727375	54
GATCTCG	379535	55.721195	39