HGGK5BGX3_n01_5485.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGGK5BGX3_n01_5485.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24118723
Sequences flagged as poor quality	0
Sequence length	75
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTAGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAG	2218069	9.196461189093636	RNA PCR Primer, Index 24 (100% over 43bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	80578	0.3340889979954577	No Hit
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTAGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	31415	0.1302515062675582	RNA PCR Primer, Index 24 (100% over 43bp)
AGATCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	25021	0.10374098164318236	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAAAAAG	291985	57.667366	69
GAAAAAA	315060	54.628353	64
GCTTGAA	311490	54.62716	60
TCGGGGG	4675	54.315384	4
CTTGAAA	317300	53.75193	61
TGCTTGA	322495	52.65318	59
TGAAAAA	328730	52.17649	63
TTGAAAA	330310	51.766068	62
CTGCTTG	353445	47.967457	58
GATCGGG	5610	46.862164	2
ATCGGGG	5385	46.8332	3
CGGGGGG	5685	45.51531	5
TCTGCTT	378320	44.903816	57
TTCTGCT	389170	43.606693	56
CTTCTGC	393085	43.25691	55
TCTTCTG	404355	42.038906	54
GTCTTCT	405070	41.969135	53
CGTCTTC	406535	41.85515	52
CCGTCTT	407115	41.771206	51
GCCGTCT	411500	41.320816	50