HGGHHBGX2_n01_9w-8.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGGHHBGX2_n01_9w-8.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10080680
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGGCGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	61028	0.6053956677525723	RNA PCR Primer, Index 33 (100% over 43bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCAGGCG	8505	59.910618	33
CGTATGC	8585	59.59403	44
TATGCCG	8635	59.130566	46
GTATGCC	8985	56.749287	45
CAGGCGA	8865	56.50425	34
ATGCCGT	9045	56.26037	47
TCGTATG	9205	55.504856	43
GCACACG	11585	55.296318	11
ACGTCTG	11540	55.27225	15
CACACGT	11710	54.617397	12
ACCAGGC	9400	54.24333	32
CTCGTAT	9220	52.832	42
ACACGTC	12235	52.330177	13
AGGCGAT	9465	52.192375	35
GGCGATC	9160	51.708492	36
CACGTCT	12435	51.377296	14
GCCGTCT	9985	50.791443	49
AGCACAC	12700	50.468723	10
GCGATCT	9475	49.880196	37
TCTCGTA	9840	48.976784	41